Experiment: Ceftazidime 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0053 and Synpcc7942_0054 are separated by 70 nucleotides Synpcc7942_0054 and Synpcc7942_0055 are separated by 32 nucleotides Synpcc7942_0055 and rfbE are separated by 34 nucleotides
Synpcc7942_0053: Synpcc7942_0053 - hypothetical protein, at 55,204 to 56,352
_0053
Synpcc7942_0054: Synpcc7942_0054 - hypothetical protein, at 56,423 to 57,190
_0054
Synpcc7942_0055: Synpcc7942_0055 - hypothetical protein, at 57,223 to 57,906
_0055
Synpcc7942_0056: rfbE - perosamine synthetase, at 57,941 to 59,068
rfbE
Position (kb) 57
58 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 56.256 kb on + strand at 56.268 kb on + strand at 56.294 kb on - strand at 56.302 kb on - strand at 56.556 kb on + strand, within Synpcc7942_0054 at 56.564 kb on - strand, within Synpcc7942_0054 at 56.564 kb on - strand, within Synpcc7942_0054 at 56.683 kb on - strand, within Synpcc7942_0054 at 56.694 kb on - strand, within Synpcc7942_0054 at 56.809 kb on - strand, within Synpcc7942_0054 at 56.881 kb on + strand, within Synpcc7942_0054 at 56.953 kb on + strand, within Synpcc7942_0054 at 56.961 kb on - strand, within Synpcc7942_0054 at 57.014 kb on + strand, within Synpcc7942_0054 at 57.014 kb on - strand, within Synpcc7942_0054 at 57.022 kb on - strand, within Synpcc7942_0054 at 57.147 kb on + strand at 57.278 kb on + strand at 57.329 kb on - strand, within Synpcc7942_0055 at 57.386 kb on + strand, within Synpcc7942_0055 at 57.483 kb on - strand, within Synpcc7942_0055 at 57.528 kb on - strand, within Synpcc7942_0055 at 57.687 kb on - strand, within Synpcc7942_0055 at 58.021 kb on + strand at 58.064 kb on + strand, within rfbE at 58.067 kb on - strand, within rfbE at 58.071 kb on + strand, within rfbE at 58.221 kb on - strand, within rfbE at 58.258 kb on + strand at 58.276 kb on - strand, within rfbE at 58.484 kb on + strand, within rfbE at 58.545 kb on + strand, within rfbE at 58.568 kb on + strand, within rfbE at 58.706 kb on + strand, within rfbE at 58.717 kb on + strand, within rfbE at 58.828 kb on + strand, within rfbE at 58.864 kb on - strand, within rfbE at 58.884 kb on - strand, within rfbE
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.0625 mg/ml remove 56,256 + -0.2 56,268 + -2.7 56,294 - -1.8 56,302 - -3.1 56,556 + Synpcc7942_0054 0.17 -0.3 56,564 - Synpcc7942_0054 0.18 -2.1 56,564 - Synpcc7942_0054 0.18 -0.1 56,683 - Synpcc7942_0054 0.34 -1.4 56,694 - Synpcc7942_0054 0.35 +1.3 56,809 - Synpcc7942_0054 0.50 -0.5 56,881 + Synpcc7942_0054 0.60 -2.7 56,953 + Synpcc7942_0054 0.69 +0.2 56,961 - Synpcc7942_0054 0.70 +2.1 57,014 + Synpcc7942_0054 0.77 -2.4 57,014 - Synpcc7942_0054 0.77 +0.3 57,022 - Synpcc7942_0054 0.78 -1.3 57,147 + -0.1 57,278 + -1.5 57,329 - Synpcc7942_0055 0.15 +0.9 57,386 + Synpcc7942_0055 0.24 +0.6 57,483 - Synpcc7942_0055 0.38 +1.1 57,528 - Synpcc7942_0055 0.45 +1.3 57,687 - Synpcc7942_0055 0.68 +0.5 58,021 + +0.5 58,064 + rfbE Synpcc7942_0056 0.11 +1.5 58,067 - rfbE Synpcc7942_0056 0.11 -0.5 58,071 + rfbE Synpcc7942_0056 0.12 +0.7 58,221 - rfbE Synpcc7942_0056 0.25 +0.0 58,258 + +3.4 58,276 - rfbE Synpcc7942_0056 0.30 -0.1 58,484 + rfbE Synpcc7942_0056 0.48 -3.8 58,545 + rfbE Synpcc7942_0056 0.54 -0.1 58,568 + rfbE Synpcc7942_0056 0.56 +1.4 58,706 + rfbE Synpcc7942_0056 0.68 -0.7 58,717 + rfbE Synpcc7942_0056 0.69 -0.8 58,828 + rfbE Synpcc7942_0056 0.79 -4.0 58,864 - rfbE Synpcc7942_0056 0.82 +1.4 58,884 - rfbE Synpcc7942_0056 0.84 -0.2
Or see this region's nucleotide sequence