Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0052

Experiment: Ceftazidime 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0051 and Synpcc7942_0052 are separated by 4 nucleotidesSynpcc7942_0052 and Synpcc7942_0053 are separated by 173 nucleotides Synpcc7942_0051: Synpcc7942_0051 - TPR repeat, at 52,606 to 54,507 _0051 Synpcc7942_0052: Synpcc7942_0052 - hypothetical protein, at 54,512 to 55,030 _0052 Synpcc7942_0053: Synpcc7942_0053 - hypothetical protein, at 55,204 to 56,352 _0053 Position (kb) 54 55 56Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 53.691 kb on + strand, within Synpcc7942_0051at 53.697 kb on - strand, within Synpcc7942_0051at 53.816 kb on + strand, within Synpcc7942_0051at 53.824 kb on - strand, within Synpcc7942_0051at 53.892 kb on - strand, within Synpcc7942_0051at 53.980 kb on + strand, within Synpcc7942_0051at 54.026 kb on + strand, within Synpcc7942_0051at 54.149 kb on - strand, within Synpcc7942_0051at 54.316 kb on + strand, within Synpcc7942_0051at 54.361 kb on - strandat 54.496 kb on - strandat 54.707 kb on - strand, within Synpcc7942_0052at 54.755 kb on - strand, within Synpcc7942_0052at 54.768 kb on - strand, within Synpcc7942_0052at 54.768 kb on - strand, within Synpcc7942_0052at 55.322 kb on + strand, within Synpcc7942_0053at 55.656 kb on + strand, within Synpcc7942_0053at 55.664 kb on - strand, within Synpcc7942_0053at 55.678 kb on + strand, within Synpcc7942_0053at 55.700 kb on - strand, within Synpcc7942_0053at 55.731 kb on + strand, within Synpcc7942_0053at 55.858 kb on + strand, within Synpcc7942_0053at 56.006 kb on - strand, within Synpcc7942_0053

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Per-strain Table

Position Strand Gene LocusTag Fraction Ceftazidime 0.0625 mg/ml
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53,691 + Synpcc7942_0051 0.57 -3.3
53,697 - Synpcc7942_0051 0.57 -1.1
53,816 + Synpcc7942_0051 0.64 -0.1
53,824 - Synpcc7942_0051 0.64 -1.1
53,892 - Synpcc7942_0051 0.68 -3.4
53,980 + Synpcc7942_0051 0.72 -1.9
54,026 + Synpcc7942_0051 0.75 -3.1
54,149 - Synpcc7942_0051 0.81 +0.7
54,316 + Synpcc7942_0051 0.90 -2.4
54,361 - -1.6
54,496 - -2.8
54,707 - Synpcc7942_0052 0.38 -1.7
54,755 - Synpcc7942_0052 0.47 +1.9
54,768 - Synpcc7942_0052 0.49 -3.2
54,768 - Synpcc7942_0052 0.49 -2.1
55,322 + Synpcc7942_0053 0.10 +3.8
55,656 + Synpcc7942_0053 0.39 -3.1
55,664 - Synpcc7942_0053 0.40 +0.1
55,678 + Synpcc7942_0053 0.41 +0.2
55,700 - Synpcc7942_0053 0.43 -0.4
55,731 + Synpcc7942_0053 0.46 +0.4
55,858 + Synpcc7942_0053 0.57 +0.5
56,006 - Synpcc7942_0053 0.70 +1.9

Or see this region's nucleotide sequence