Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_579 and Pf1N1B4_580 are separated by 11 nucleotides Pf1N1B4_580 and Pf1N1B4_581 overlap by 14 nucleotides Pf1N1B4_581 and Pf1N1B4_582 are separated by 157 nucleotides Pf1N1B4_582 and Pf1N1B4_583 are separated by 201 nucleotides
Pf1N1B4_579 - Membrane fusion component of tripartite multidrug resistance system, at 671,503 to 672,363
_579
Pf1N1B4_580 - FIG00953813: hypothetical protein, at 672,375 to 672,581
_580
Pf1N1B4_581 - membrane protein, putative, at 672,568 to 674,556
_581
Pf1N1B4_582 - FIG00959696: hypothetical protein, at 674,714 to 675,181
_582
Pf1N1B4_583 - FIG00957748: hypothetical protein, at 675,383 to 675,622
_583
Position (kb) 672
673
674
675 Strain fitness (log2 ratio) -2
-1
0
1
2 at 671.665 kb on - strand, within Pf1N1B4_579 at 671.665 kb on - strand, within Pf1N1B4_579 at 671.789 kb on + strand, within Pf1N1B4_579 at 671.801 kb on + strand, within Pf1N1B4_579 at 671.802 kb on - strand, within Pf1N1B4_579 at 671.802 kb on - strand, within Pf1N1B4_579 at 671.802 kb on - strand, within Pf1N1B4_579 at 671.802 kb on - strand, within Pf1N1B4_579 at 671.802 kb on - strand at 671.852 kb on + strand, within Pf1N1B4_579 at 671.852 kb on + strand, within Pf1N1B4_579 at 671.852 kb on + strand, within Pf1N1B4_579 at 671.853 kb on - strand, within Pf1N1B4_579 at 671.853 kb on - strand, within Pf1N1B4_579 at 671.853 kb on - strand, within Pf1N1B4_579 at 671.853 kb on - strand, within Pf1N1B4_579 at 671.853 kb on - strand, within Pf1N1B4_579 at 671.856 kb on + strand, within Pf1N1B4_579 at 671.856 kb on + strand, within Pf1N1B4_579 at 671.857 kb on - strand, within Pf1N1B4_579 at 672.281 kb on + strand at 672.281 kb on + strand at 672.281 kb on + strand at 672.281 kb on + strand at 672.281 kb on + strand at 672.281 kb on + strand at 672.281 kb on + strand at 672.281 kb on + strand at 672.281 kb on + strand at 672.281 kb on + strand at 672.282 kb on - strand at 672.282 kb on - strand at 672.282 kb on - strand at 672.282 kb on - strand at 672.284 kb on + strand at 672.350 kb on - strand at 672.357 kb on + strand at 672.357 kb on + strand at 672.357 kb on + strand at 672.358 kb on - strand at 672.358 kb on - strand at 672.358 kb on - strand at 672.358 kb on - strand at 672.358 kb on - strand at 672.358 kb on - strand at 672.358 kb on - strand at 672.358 kb on - strand at 672.358 kb on - strand at 672.358 kb on - strand at 672.364 kb on - strand at 672.364 kb on - strand at 672.377 kb on - strand at 672.378 kb on + strand at 672.412 kb on - strand, within Pf1N1B4_580 at 672.412 kb on - strand, within Pf1N1B4_580 at 672.412 kb on - strand, within Pf1N1B4_580 at 672.412 kb on - strand, within Pf1N1B4_580 at 672.421 kb on + strand, within Pf1N1B4_580 at 672.421 kb on + strand, within Pf1N1B4_580 at 672.421 kb on + strand at 672.421 kb on + strand, within Pf1N1B4_580 at 672.421 kb on + strand, within Pf1N1B4_580 at 672.421 kb on + strand, within Pf1N1B4_580 at 672.422 kb on - strand, within Pf1N1B4_580 at 672.422 kb on - strand, within Pf1N1B4_580 at 672.422 kb on - strand, within Pf1N1B4_580 at 672.422 kb on - strand, within Pf1N1B4_580 at 672.422 kb on - strand, within Pf1N1B4_580 at 672.422 kb on - strand, within Pf1N1B4_580 at 673.051 kb on - strand, within Pf1N1B4_581 at 673.078 kb on + strand, within Pf1N1B4_581 at 673.174 kb on - strand at 673.174 kb on - strand, within Pf1N1B4_581 at 673.174 kb on - strand, within Pf1N1B4_581 at 673.644 kb on - strand, within Pf1N1B4_581 at 673.644 kb on - strand, within Pf1N1B4_581 at 673.644 kb on - strand, within Pf1N1B4_581 at 673.644 kb on - strand, within Pf1N1B4_581 at 673.946 kb on - strand, within Pf1N1B4_581 at 673.946 kb on - strand, within Pf1N1B4_581 at 673.955 kb on - strand, within Pf1N1B4_581 at 673.963 kb on - strand, within Pf1N1B4_581 at 674.161 kb on - strand, within Pf1N1B4_581 at 674.213 kb on + strand, within Pf1N1B4_581 at 674.251 kb on - strand, within Pf1N1B4_581 at 674.410 kb on - strand at 674.558 kb on + strand at 674.559 kb on - strand at 674.559 kb on - strand at 674.559 kb on - strand at 674.559 kb on - strand at 674.559 kb on - strand at 674.634 kb on + strand at 674.656 kb on - strand at 674.715 kb on + strand at 674.715 kb on + strand at 674.715 kb on + strand at 674.715 kb on + strand at 674.715 kb on + strand at 674.716 kb on - strand at 674.716 kb on - strand at 674.716 kb on - strand at 674.716 kb on - strand at 674.716 kb on - strand at 674.716 kb on - strand at 674.716 kb on - strand at 674.716 kb on - strand at 674.716 kb on - strand at 674.781 kb on + strand, within Pf1N1B4_582 at 674.850 kb on + strand, within Pf1N1B4_582 at 674.851 kb on - strand, within Pf1N1B4_582 at 674.851 kb on - strand, within Pf1N1B4_582 at 674.851 kb on - strand, within Pf1N1B4_582 at 674.851 kb on - strand, within Pf1N1B4_582 at 674.851 kb on - strand, within Pf1N1B4_582 at 674.851 kb on - strand, within Pf1N1B4_582 at 675.056 kb on - strand, within Pf1N1B4_582 at 675.056 kb on - strand, within Pf1N1B4_582 at 675.056 kb on - strand, within Pf1N1B4_582 at 675.149 kb on + strand at 675.150 kb on - strand at 675.150 kb on - strand at 675.166 kb on + strand at 675.167 kb on - strand at 675.167 kb on - strand at 675.169 kb on + strand at 675.215 kb on + strand at 675.215 kb on + strand at 675.215 kb on + strand at 675.216 kb on - strand at 675.216 kb on - strand at 675.220 kb on - strand at 675.441 kb on - strand, within Pf1N1B4_583 at 675.441 kb on - strand, within Pf1N1B4_583 at 675.441 kb on - strand, within Pf1N1B4_583 at 675.441 kb on - strand, within Pf1N1B4_583
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 671,665 - Pf1N1B4_579 0.19 +0.2 671,665 - Pf1N1B4_579 0.19 -0.6 671,789 + Pf1N1B4_579 0.33 -0.8 671,801 + Pf1N1B4_579 0.35 -0.4 671,802 - Pf1N1B4_579 0.35 -2.1 671,802 - Pf1N1B4_579 0.35 -1.6 671,802 - Pf1N1B4_579 0.35 +0.4 671,802 - Pf1N1B4_579 0.35 +0.5 671,802 - -1.1 671,852 + Pf1N1B4_579 0.41 +1.9 671,852 + Pf1N1B4_579 0.41 +0.0 671,852 + Pf1N1B4_579 0.41 -0.6 671,853 - Pf1N1B4_579 0.41 -0.4 671,853 - Pf1N1B4_579 0.41 -0.8 671,853 - Pf1N1B4_579 0.41 +0.7 671,853 - Pf1N1B4_579 0.41 +0.5 671,853 - Pf1N1B4_579 0.41 +1.4 671,856 + Pf1N1B4_579 0.41 +0.9 671,856 + Pf1N1B4_579 0.41 -0.1 671,857 - Pf1N1B4_579 0.41 +1.8 672,281 + -1.1 672,281 + -0.6 672,281 + +0.2 672,281 + +0.7 672,281 + +0.4 672,281 + +0.9 672,281 + -0.5 672,281 + +0.3 672,281 + +0.7 672,281 + +0.1 672,282 - -0.3 672,282 - -0.4 672,282 - -1.6 672,282 - +0.7 672,284 + -1.4 672,350 - -1.1 672,357 + -0.5 672,357 + -1.1 672,357 + -0.1 672,358 - -0.1 672,358 - +2.3 672,358 - +0.6 672,358 - +1.7 672,358 - +0.0 672,358 - +0.4 672,358 - -0.1 672,358 - +0.9 672,358 - -0.1 672,358 - +1.1 672,364 - -0.1 672,364 - -1.6 672,377 - -0.1 672,378 + -0.8 672,412 - Pf1N1B4_580 0.18 -0.6 672,412 - Pf1N1B4_580 0.18 +1.9 672,412 - Pf1N1B4_580 0.18 -1.1 672,412 - Pf1N1B4_580 0.18 +0.4 672,421 + Pf1N1B4_580 0.22 +0.2 672,421 + Pf1N1B4_580 0.22 -0.1 672,421 + +0.9 672,421 + Pf1N1B4_580 0.22 -0.6 672,421 + Pf1N1B4_580 0.22 +0.4 672,421 + Pf1N1B4_580 0.22 +0.3 672,422 - Pf1N1B4_580 0.23 +0.7 672,422 - Pf1N1B4_580 0.23 +1.5 672,422 - Pf1N1B4_580 0.23 +0.5 672,422 - Pf1N1B4_580 0.23 +0.9 672,422 - Pf1N1B4_580 0.23 -0.1 672,422 - Pf1N1B4_580 0.23 +1.4 673,051 - Pf1N1B4_581 0.24 -0.1 673,078 + Pf1N1B4_581 0.26 +1.2 673,174 - -0.1 673,174 - Pf1N1B4_581 0.30 +0.9 673,174 - Pf1N1B4_581 0.30 -0.1 673,644 - Pf1N1B4_581 0.54 +0.5 673,644 - Pf1N1B4_581 0.54 -0.6 673,644 - Pf1N1B4_581 0.54 +1.5 673,644 - Pf1N1B4_581 0.54 -2.1 673,946 - Pf1N1B4_581 0.69 +1.4 673,946 - Pf1N1B4_581 0.69 +0.1 673,955 - Pf1N1B4_581 0.70 -0.6 673,963 - Pf1N1B4_581 0.70 -0.1 674,161 - Pf1N1B4_581 0.80 -0.1 674,213 + Pf1N1B4_581 0.83 +0.7 674,251 - Pf1N1B4_581 0.85 +0.9 674,410 - +0.3 674,558 + +0.8 674,559 - -0.1 674,559 - +1.5 674,559 - -2.1 674,559 - -0.2 674,559 - +1.3 674,634 + -0.2 674,656 - -0.1 674,715 + +0.1 674,715 + -0.1 674,715 + +0.4 674,715 + -1.1 674,715 + +2.5 674,716 - -0.3 674,716 - +1.2 674,716 - -1.4 674,716 - -0.5 674,716 - -0.6 674,716 - +0.7 674,716 - +0.5 674,716 - -0.6 674,716 - -1.1 674,781 + Pf1N1B4_582 0.14 +0.4 674,850 + Pf1N1B4_582 0.29 +1.8 674,851 - Pf1N1B4_582 0.29 +0.3 674,851 - Pf1N1B4_582 0.29 -1.2 674,851 - Pf1N1B4_582 0.29 +0.4 674,851 - Pf1N1B4_582 0.29 -1.6 674,851 - Pf1N1B4_582 0.29 -0.4 674,851 - Pf1N1B4_582 0.29 -0.2 675,056 - Pf1N1B4_582 0.73 -1.6 675,056 - Pf1N1B4_582 0.73 +0.5 675,056 - Pf1N1B4_582 0.73 +0.4 675,149 + +0.5 675,150 - +0.7 675,150 - +0.7 675,166 + +1.5 675,167 - -2.1 675,167 - -0.1 675,169 + -0.1 675,215 + +0.9 675,215 + -0.1 675,215 + +0.9 675,216 - -0.1 675,216 - +0.5 675,220 - +0.3 675,441 - Pf1N1B4_583 0.24 +0.2 675,441 - Pf1N1B4_583 0.24 -0.3 675,441 - Pf1N1B4_583 0.24 -0.1 675,441 - Pf1N1B4_583 0.24 -1.1
Or see this region's nucleotide sequence