Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5777

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5776 and Pf1N1B4_5777 are separated by 115 nucleotidesPf1N1B4_5777 and Pf1N1B4_5778 are separated by 31 nucleotidesPf1N1B4_5778 and Pf1N1B4_5779 overlap by 4 nucleotides Pf1N1B4_5776 - short-chain dehydrogenase/reductase, at 213,379 to 214,122 _5776 Pf1N1B4_5777 - Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL, at 214,238 to 214,765 _5777 Pf1N1B4_5778 - Nitrous oxide reductase maturation transmembrane protein NosY, at 214,797 to 215,627 _5778 Pf1N1B4_5779 - Nitrous oxide reductase maturation protein NosF (ATPase), at 215,624 to 216,547 _5779 Position (kb) 214 215Strain fitness (log2 ratio) -2 -1 0 1 2at 213.251 kb on + strandat 213.251 kb on + strandat 213.324 kb on - strandat 213.324 kb on - strandat 213.327 kb on - strandat 213.349 kb on - strandat 213.349 kb on - strandat 213.352 kb on + strandat 213.352 kb on + strandat 213.353 kb on - strandat 213.353 kb on - strandat 213.353 kb on - strandat 213.353 kb on - strandat 213.721 kb on - strand, within Pf1N1B4_5776at 213.876 kb on - strand, within Pf1N1B4_5776at 214.175 kb on + strandat 214.175 kb on + strandat 214.197 kb on + strandat 214.198 kb on - strandat 214.370 kb on + strand, within Pf1N1B4_5777at 214.410 kb on + strandat 214.410 kb on + strand, within Pf1N1B4_5777at 214.411 kb on - strand, within Pf1N1B4_5777at 214.485 kb on + strandat 214.485 kb on + strand, within Pf1N1B4_5777at 214.486 kb on - strand, within Pf1N1B4_5777at 214.718 kb on + strandat 214.719 kb on - strandat 214.760 kb on - strandat 214.760 kb on - strandat 214.986 kb on + strand, within Pf1N1B4_5778at 215.143 kb on + strand, within Pf1N1B4_5778at 215.668 kb on - strandat 215.668 kb on - strandat 215.676 kb on + strandat 215.735 kb on + strand, within Pf1N1B4_5779at 215.736 kb on - strand, within Pf1N1B4_5779

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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213,251 + -1.3
213,251 + -0.3
213,324 - -0.9
213,324 - +2.7
213,327 - -0.0
213,349 - +0.8
213,349 - -0.3
213,352 + -0.4
213,352 + -0.3
213,353 - -1.3
213,353 - +2.2
213,353 - +0.2
213,353 - +0.4
213,721 - Pf1N1B4_5776 0.46 -0.3
213,876 - Pf1N1B4_5776 0.67 +1.7
214,175 + -0.3
214,175 + +0.5
214,197 + -1.9
214,198 - -0.3
214,370 + Pf1N1B4_5777 0.25 -1.3
214,410 + +1.2
214,410 + Pf1N1B4_5777 0.33 -1.5
214,411 - Pf1N1B4_5777 0.33 -0.1
214,485 + -1.3
214,485 + Pf1N1B4_5777 0.47 -0.1
214,486 - Pf1N1B4_5777 0.47 -1.0
214,718 + +1.8
214,719 - -0.3
214,760 - +0.4
214,760 - +0.1
214,986 + Pf1N1B4_5778 0.23 +1.2
215,143 + Pf1N1B4_5778 0.42 +0.5
215,668 - -0.7
215,668 - -0.3
215,676 + +1.2
215,735 + Pf1N1B4_5779 0.12 +2.5
215,736 - Pf1N1B4_5779 0.12 -0.5

Or see this region's nucleotide sequence