Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4756 and Pf1N1B4_4757 are separated by 145 nucleotides Pf1N1B4_4757 and Pf1N1B4_4758 are separated by 291 nucleotides Pf1N1B4_4758 and Pf1N1B4_4759 are separated by 12 nucleotides Pf1N1B4_4759 and Pf1N1B4_4760 are separated by 391 nucleotides
Pf1N1B4_4756 - Magnesium and cobalt transport protein CorA, at 5,254,479 to 5,255,402
_4756
Pf1N1B4_4757 - FIG00958264: hypothetical protein, at 5,255,548 to 5,255,883
_4757
Pf1N1B4_4758 - Threonine dehydratase biosynthetic (EC 4.3.1.19), at 5,256,175 to 5,257,188
_4758
Pf1N1B4_4759 - Proteinase inhibitor I11, ecotin precursor, at 5,257,201 to 5,257,683
_4759
Pf1N1B4_4760 - FIG00962118: hypothetical protein, at 5,258,075 to 5,258,344
_4760
Position (kb) 5256
5257
5258 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5255.450 kb on + strand at 5255.450 kb on + strand at 5255.450 kb on + strand at 5255.491 kb on - strand at 5255.655 kb on - strand, within Pf1N1B4_4757 at 5255.702 kb on + strand, within Pf1N1B4_4757 at 5255.702 kb on + strand, within Pf1N1B4_4757 at 5255.702 kb on + strand, within Pf1N1B4_4757 at 5255.703 kb on - strand, within Pf1N1B4_4757 at 5255.735 kb on + strand, within Pf1N1B4_4757 at 5255.737 kb on + strand, within Pf1N1B4_4757 at 5255.738 kb on - strand, within Pf1N1B4_4757 at 5255.738 kb on - strand, within Pf1N1B4_4757 at 5255.738 kb on - strand, within Pf1N1B4_4757 at 5255.738 kb on - strand, within Pf1N1B4_4757 at 5255.738 kb on - strand, within Pf1N1B4_4757 at 5255.738 kb on - strand, within Pf1N1B4_4757 at 5255.738 kb on - strand, within Pf1N1B4_4757 at 5255.738 kb on - strand, within Pf1N1B4_4757 at 5255.834 kb on + strand, within Pf1N1B4_4757 at 5255.922 kb on + strand at 5255.923 kb on - strand at 5255.995 kb on + strand at 5255.995 kb on + strand at 5256.017 kb on + strand at 5256.017 kb on + strand at 5256.018 kb on - strand at 5256.018 kb on - strand at 5256.018 kb on - strand at 5256.018 kb on - strand at 5256.018 kb on - strand at 5256.018 kb on - strand at 5256.018 kb on - strand at 5256.018 kb on - strand at 5256.020 kb on + strand at 5256.214 kb on + strand at 5256.215 kb on - strand at 5256.215 kb on - strand at 5256.368 kb on - strand, within Pf1N1B4_4758 at 5256.521 kb on + strand, within Pf1N1B4_4758 at 5256.522 kb on - strand, within Pf1N1B4_4758 at 5256.590 kb on - strand, within Pf1N1B4_4758 at 5256.776 kb on - strand, within Pf1N1B4_4758 at 5257.067 kb on - strand, within Pf1N1B4_4758 at 5257.067 kb on - strand, within Pf1N1B4_4758 at 5257.067 kb on - strand, within Pf1N1B4_4758 at 5257.277 kb on + strand, within Pf1N1B4_4759 at 5257.304 kb on + strand, within Pf1N1B4_4759 at 5257.305 kb on - strand, within Pf1N1B4_4759 at 5257.645 kb on + strand at 5257.901 kb on + strand at 5258.097 kb on + strand at 5258.180 kb on + strand, within Pf1N1B4_4760
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 5,255,450 + +1.6 5,255,450 + +1.7 5,255,450 + +1.1 5,255,491 - +1.5 5,255,655 - Pf1N1B4_4757 0.32 +0.4 5,255,702 + Pf1N1B4_4757 0.46 +0.5 5,255,702 + Pf1N1B4_4757 0.46 -0.9 5,255,702 + Pf1N1B4_4757 0.46 -1.5 5,255,703 - Pf1N1B4_4757 0.46 +2.5 5,255,735 + Pf1N1B4_4757 0.56 -1.5 5,255,737 + Pf1N1B4_4757 0.56 -0.5 5,255,738 - Pf1N1B4_4757 0.57 -1.3 5,255,738 - Pf1N1B4_4757 0.57 -0.5 5,255,738 - Pf1N1B4_4757 0.57 +1.7 5,255,738 - Pf1N1B4_4757 0.57 +0.1 5,255,738 - Pf1N1B4_4757 0.57 -1.2 5,255,738 - Pf1N1B4_4757 0.57 +0.5 5,255,738 - Pf1N1B4_4757 0.57 -1.5 5,255,738 - Pf1N1B4_4757 0.57 +1.8 5,255,834 + Pf1N1B4_4757 0.85 -0.1 5,255,922 + -1.1 5,255,923 - -0.5 5,255,995 + -1.5 5,255,995 + -1.5 5,256,017 + -1.1 5,256,017 + -2.2 5,256,018 - -0.5 5,256,018 - +1.1 5,256,018 - -0.8 5,256,018 - -2.9 5,256,018 - -0.5 5,256,018 - -0.1 5,256,018 - -0.9 5,256,018 - -0.5 5,256,020 + -0.5 5,256,214 + +0.5 5,256,215 - -1.5 5,256,215 - -1.5 5,256,368 - Pf1N1B4_4758 0.19 -1.5 5,256,521 + Pf1N1B4_4758 0.34 -2.5 5,256,522 - Pf1N1B4_4758 0.34 -0.5 5,256,590 - Pf1N1B4_4758 0.41 -1.5 5,256,776 - Pf1N1B4_4758 0.59 -2.2 5,257,067 - Pf1N1B4_4758 0.88 -2.1 5,257,067 - Pf1N1B4_4758 0.88 -2.1 5,257,067 - Pf1N1B4_4758 0.88 -1.5 5,257,277 + Pf1N1B4_4759 0.16 -1.1 5,257,304 + Pf1N1B4_4759 0.21 -1.5 5,257,305 - Pf1N1B4_4759 0.22 +0.6 5,257,645 + -0.5 5,257,901 + -0.0 5,258,097 + +1.1 5,258,180 + Pf1N1B4_4760 0.39 +0.8
Or see this region's nucleotide sequence