Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4605

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4604 and Pf1N1B4_4605 are separated by 229 nucleotidesPf1N1B4_4605 and Pf1N1B4_4606 are separated by 125 nucleotidesPf1N1B4_4606 and Pf1N1B4_4607 are separated by 22 nucleotidesPf1N1B4_4607 and Pf1N1B4_4608 overlap by 25 nucleotides Pf1N1B4_4604 - FMN reductase, NADPH-dependent, at 5,077,178 to 5,077,738 _4604 Pf1N1B4_4605 - FIG00953564: hypothetical protein, at 5,077,968 to 5,078,918 _4605 Pf1N1B4_4606 - NAD kinase (EC 2.7.1.23), at 5,079,044 to 5,079,364 _4606 Pf1N1B4_4607 - NAD kinase (EC 2.7.1.23), at 5,079,387 to 5,079,728 _4607 Pf1N1B4_4608 - NAD kinase (EC 2.7.1.23), at 5,079,704 to 5,079,934 _4608 Position (kb) 5077 5078 5079Strain fitness (log2 ratio) -2 -1 0 1 2at 5077.038 kb on + strandat 5077.058 kb on + strandat 5077.136 kb on + strandat 5077.136 kb on + strandat 5077.137 kb on - strandat 5077.137 kb on - strandat 5077.137 kb on - strandat 5077.137 kb on - strandat 5077.138 kb on + strandat 5077.138 kb on + strandat 5077.138 kb on + strandat 5077.139 kb on - strandat 5077.142 kb on + strandat 5077.142 kb on + strandat 5077.142 kb on + strandat 5077.142 kb on + strandat 5077.142 kb on + strandat 5077.143 kb on - strandat 5077.190 kb on + strandat 5077.320 kb on - strand, within Pf1N1B4_4604at 5077.418 kb on + strand, within Pf1N1B4_4604at 5077.418 kb on + strand, within Pf1N1B4_4604at 5077.616 kb on + strand, within Pf1N1B4_4604at 5077.617 kb on - strand, within Pf1N1B4_4604at 5077.726 kb on + strandat 5077.726 kb on + strandat 5077.726 kb on + strandat 5077.727 kb on - strandat 5077.745 kb on + strandat 5077.745 kb on + strandat 5077.745 kb on + strandat 5077.745 kb on + strandat 5077.745 kb on + strandat 5077.745 kb on + strandat 5077.745 kb on + strandat 5077.746 kb on - strandat 5077.746 kb on - strandat 5077.759 kb on + strandat 5077.759 kb on + strandat 5077.759 kb on + strandat 5077.760 kb on - strandat 5077.861 kb on - strandat 5078.315 kb on - strandat 5078.665 kb on + strand, within Pf1N1B4_4605at 5078.665 kb on + strandat 5078.665 kb on + strand, within Pf1N1B4_4605at 5078.668 kb on + strand, within Pf1N1B4_4605at 5078.719 kb on + strand, within Pf1N1B4_4605at 5078.720 kb on - strand, within Pf1N1B4_4605at 5078.890 kb on - strandat 5078.910 kb on + strandat 5078.911 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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5,077,038 + -0.5
5,077,058 + -0.5
5,077,136 + +0.5
5,077,136 + +0.1
5,077,137 - +0.5
5,077,137 - +2.3
5,077,137 - -0.5
5,077,137 - -0.9
5,077,138 + +0.8
5,077,138 + +0.8
5,077,138 + +0.3
5,077,139 - -0.5
5,077,142 + +0.5
5,077,142 + +1.4
5,077,142 + +0.2
5,077,142 + +0.4
5,077,142 + -0.5
5,077,143 - +0.5
5,077,190 + -0.8
5,077,320 - Pf1N1B4_4604 0.25 +0.5
5,077,418 + Pf1N1B4_4604 0.43 +1.0
5,077,418 + Pf1N1B4_4604 0.43 -1.0
5,077,616 + Pf1N1B4_4604 0.78 +0.1
5,077,617 - Pf1N1B4_4604 0.78 +0.5
5,077,726 + +0.4
5,077,726 + +1.8
5,077,726 + -2.1
5,077,727 - +0.5
5,077,745 + +1.1
5,077,745 + -0.2
5,077,745 + +0.2
5,077,745 + -1.5
5,077,745 + +0.5
5,077,745 + -0.5
5,077,745 + -0.5
5,077,746 - +0.1
5,077,746 - -0.9
5,077,759 + -0.7
5,077,759 + -1.5
5,077,759 + +1.3
5,077,760 - +0.5
5,077,861 - -0.1
5,078,315 - -0.5
5,078,665 + Pf1N1B4_4605 0.73 -0.1
5,078,665 + -1.5
5,078,665 + Pf1N1B4_4605 0.73 -1.2
5,078,668 + Pf1N1B4_4605 0.74 +0.8
5,078,719 + Pf1N1B4_4605 0.79 -2.5
5,078,720 - Pf1N1B4_4605 0.79 -0.5
5,078,890 - +2.1
5,078,910 + +0.0
5,078,911 - -0.1

Or see this region's nucleotide sequence