Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4110 and Pf1N1B4_4111 are separated by 173 nucleotides Pf1N1B4_4111 and Pf1N1B4_4112 are separated by 141 nucleotides Pf1N1B4_4112 and Pf1N1B4_4113 overlap by 4 nucleotides Pf1N1B4_4113 and Pf1N1B4_4114 overlap by 2 nucleotides Pf1N1B4_4114 and Pf1N1B4_4115 are separated by 97 nucleotides
Pf1N1B4_4110 - hypothetical protein, at 4,556,372 to 4,556,707
_4110
Pf1N1B4_4111 - Panthothenate synthetase, at 4,556,881 to 4,557,171
_4111
Pf1N1B4_4112 - hypothetical protein, at 4,557,313 to 4,557,564
_4112
Pf1N1B4_4113 - Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1), at 4,557,561 to 4,558,040
_4113
Pf1N1B4_4114 - hypothetical protein, at 4,558,039 to 4,558,152
_4114
Pf1N1B4_4115 - FIG074102: hypothetical protein, at 4,558,250 to 4,558,729
_4115
Position (kb) 4557
4558 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4556.378 kb on + strand at 4556.379 kb on - strand at 4556.379 kb on - strand at 4556.379 kb on - strand at 4556.379 kb on - strand at 4556.379 kb on - strand at 4556.474 kb on + strand, within Pf1N1B4_4110 at 4556.474 kb on + strand, within Pf1N1B4_4110 at 4556.475 kb on - strand, within Pf1N1B4_4110 at 4556.475 kb on - strand, within Pf1N1B4_4110 at 4557.020 kb on - strand, within Pf1N1B4_4111 at 4557.020 kb on - strand, within Pf1N1B4_4111 at 4557.020 kb on - strand, within Pf1N1B4_4111 at 4557.020 kb on - strand, within Pf1N1B4_4111 at 4557.020 kb on - strand, within Pf1N1B4_4111 at 4557.188 kb on - strand at 4557.194 kb on + strand at 4557.231 kb on + strand at 4557.231 kb on + strand at 4557.231 kb on + strand at 4557.232 kb on - strand at 4557.291 kb on - strand at 4557.328 kb on + strand at 4557.329 kb on - strand at 4557.423 kb on + strand, within Pf1N1B4_4112 at 4557.425 kb on + strand, within Pf1N1B4_4112 at 4557.425 kb on + strand at 4557.425 kb on + strand, within Pf1N1B4_4112 at 4557.425 kb on + strand, within Pf1N1B4_4112 at 4557.425 kb on + strand, within Pf1N1B4_4112 at 4557.425 kb on + strand, within Pf1N1B4_4112 at 4557.425 kb on + strand, within Pf1N1B4_4112 at 4557.425 kb on + strand, within Pf1N1B4_4112 at 4557.425 kb on + strand, within Pf1N1B4_4112 at 4557.426 kb on - strand, within Pf1N1B4_4112 at 4557.426 kb on - strand, within Pf1N1B4_4112 at 4557.426 kb on - strand, within Pf1N1B4_4112 at 4557.426 kb on - strand, within Pf1N1B4_4112 at 4557.426 kb on - strand, within Pf1N1B4_4112 at 4557.472 kb on - strand, within Pf1N1B4_4112 at 4557.472 kb on - strand, within Pf1N1B4_4112 at 4557.472 kb on - strand, within Pf1N1B4_4112 at 4557.549 kb on - strand at 4557.971 kb on + strand at 4557.972 kb on - strand, within Pf1N1B4_4113 at 4557.972 kb on - strand, within Pf1N1B4_4113 at 4558.062 kb on - strand, within Pf1N1B4_4114 at 4558.062 kb on - strand, within Pf1N1B4_4114 at 4558.554 kb on + strand, within Pf1N1B4_4115
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 4,556,378 + -0.7 4,556,379 - +0.7 4,556,379 - -0.3 4,556,379 - +1.3 4,556,379 - +0.7 4,556,379 - -0.1 4,556,474 + Pf1N1B4_4110 0.30 -0.9 4,556,474 + Pf1N1B4_4110 0.30 +0.7 4,556,475 - Pf1N1B4_4110 0.31 -0.3 4,556,475 - Pf1N1B4_4110 0.31 -2.3 4,557,020 - Pf1N1B4_4111 0.48 -1.0 4,557,020 - Pf1N1B4_4111 0.48 +0.2 4,557,020 - Pf1N1B4_4111 0.48 +1.3 4,557,020 - Pf1N1B4_4111 0.48 -0.3 4,557,020 - Pf1N1B4_4111 0.48 -0.8 4,557,188 - -0.3 4,557,194 + +0.0 4,557,231 + +0.3 4,557,231 + -2.3 4,557,231 + -0.3 4,557,232 - -0.7 4,557,291 - +0.3 4,557,328 + +0.0 4,557,329 - -1.3 4,557,423 + Pf1N1B4_4112 0.44 +1.3 4,557,425 + Pf1N1B4_4112 0.44 -1.0 4,557,425 + -0.3 4,557,425 + Pf1N1B4_4112 0.44 -1.3 4,557,425 + Pf1N1B4_4112 0.44 -0.3 4,557,425 + Pf1N1B4_4112 0.44 -0.7 4,557,425 + Pf1N1B4_4112 0.44 +1.3 4,557,425 + Pf1N1B4_4112 0.44 +1.3 4,557,425 + Pf1N1B4_4112 0.44 +0.4 4,557,425 + Pf1N1B4_4112 0.44 +0.8 4,557,426 - Pf1N1B4_4112 0.45 -1.3 4,557,426 - Pf1N1B4_4112 0.45 -1.2 4,557,426 - Pf1N1B4_4112 0.45 -1.3 4,557,426 - Pf1N1B4_4112 0.45 -1.6 4,557,426 - Pf1N1B4_4112 0.45 -0.8 4,557,472 - Pf1N1B4_4112 0.63 -0.7 4,557,472 - Pf1N1B4_4112 0.63 -1.3 4,557,472 - Pf1N1B4_4112 0.63 -0.9 4,557,549 - -1.9 4,557,971 + +0.7 4,557,972 - Pf1N1B4_4113 0.86 +0.7 4,557,972 - Pf1N1B4_4113 0.86 -0.3 4,558,062 - Pf1N1B4_4114 0.20 +0.8 4,558,062 - Pf1N1B4_4114 0.20 +1.9 4,558,554 + Pf1N1B4_4115 0.63 -0.1
Or see this region's nucleotide sequence