Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06416

Experiment: 2-Deoxy-D-Ribose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06415 and H281DRAFT_06416 are separated by 12 nucleotidesH281DRAFT_06416 and H281DRAFT_06417 are separated by 321 nucleotides H281DRAFT_06415: H281DRAFT_06415 - hypothetical protein, at 15,130 to 15,894 _06415 H281DRAFT_06416: H281DRAFT_06416 - Zn-dependent alcohol dehydrogenases, class III, at 15,907 to 16,434 _06416 H281DRAFT_06417: H281DRAFT_06417 - Predicted nuclease of restriction endonuclease-like (RecB) superfamily, DUF1016 family, at 16,756 to 17,805 _06417 Position (kb) 15 16 17Strain fitness (log2 ratio) -1 0 1 2at 15.019 kb on + strandat 15.020 kb on - strandat 15.020 kb on - strandat 15.118 kb on + strandat 15.118 kb on + strandat 15.118 kb on + strandat 15.119 kb on - strandat 15.169 kb on + strandat 15.170 kb on - strandat 15.173 kb on + strandat 15.515 kb on + strand, within H281DRAFT_06415at 15.657 kb on - strand, within H281DRAFT_06415at 15.694 kb on + strand, within H281DRAFT_06415at 15.695 kb on - strand, within H281DRAFT_06415at 15.695 kb on - strand, within H281DRAFT_06415at 15.695 kb on - strand, within H281DRAFT_06415at 15.695 kb on - strand, within H281DRAFT_06415at 15.758 kb on + strand, within H281DRAFT_06415at 15.759 kb on - strand, within H281DRAFT_06415at 15.810 kb on + strand, within H281DRAFT_06415at 15.810 kb on + strand, within H281DRAFT_06415at 15.811 kb on - strand, within H281DRAFT_06415at 15.836 kb on - strandat 15.957 kb on + strandat 15.957 kb on + strandat 15.957 kb on + strandat 15.957 kb on + strandat 15.958 kb on - strandat 15.961 kb on - strand, within H281DRAFT_06416at 15.961 kb on - strand, within H281DRAFT_06416at 15.961 kb on - strand, within H281DRAFT_06416at 15.987 kb on + strand, within H281DRAFT_06416at 16.088 kb on - strand, within H281DRAFT_06416at 16.101 kb on + strand, within H281DRAFT_06416at 16.101 kb on + strand, within H281DRAFT_06416at 16.300 kb on + strand, within H281DRAFT_06416at 16.300 kb on + strand, within H281DRAFT_06416at 16.300 kb on + strand, within H281DRAFT_06416at 16.301 kb on - strand, within H281DRAFT_06416at 16.301 kb on - strand, within H281DRAFT_06416at 16.417 kb on + strandat 16.417 kb on + strandat 16.417 kb on + strandat 16.417 kb on + strandat 16.417 kb on + strandat 16.462 kb on + strandat 16.497 kb on + strandat 16.523 kb on + strandat 16.523 kb on + strandat 16.524 kb on - strandat 16.557 kb on + strandat 16.578 kb on + strandat 16.578 kb on + strandat 16.578 kb on + strandat 16.578 kb on + strandat 16.579 kb on - strandat 16.730 kb on - strandat 16.730 kb on - strandat 16.733 kb on + strandat 16.757 kb on + strandat 16.757 kb on + strandat 16.940 kb on - strand, within H281DRAFT_06417at 17.018 kb on + strand, within H281DRAFT_06417at 17.060 kb on + strand, within H281DRAFT_06417at 17.061 kb on - strand, within H281DRAFT_06417at 17.061 kb on - strand, within H281DRAFT_06417at 17.081 kb on + strand, within H281DRAFT_06417at 17.082 kb on - strand, within H281DRAFT_06417at 17.082 kb on - strand, within H281DRAFT_06417at 17.089 kb on + strand, within H281DRAFT_06417at 17.089 kb on + strand, within H281DRAFT_06417at 17.089 kb on + strand, within H281DRAFT_06417at 17.089 kb on + strand, within H281DRAFT_06417at 17.089 kb on + strand, within H281DRAFT_06417at 17.090 kb on - strand, within H281DRAFT_06417at 17.181 kb on + strand, within H281DRAFT_06417at 17.182 kb on - strand, within H281DRAFT_06417at 17.255 kb on + strand, within H281DRAFT_06417

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose 10 mM (C)
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15,019 + -0.3
15,020 - -0.5
15,020 - +2.0
15,118 + +0.3
15,118 + +1.7
15,118 + +0.6
15,119 - -0.6
15,169 + +0.9
15,170 - -0.0
15,173 + +0.2
15,515 + H281DRAFT_06415 0.50 -0.3
15,657 - H281DRAFT_06415 0.69 +0.1
15,694 + H281DRAFT_06415 0.74 -0.0
15,695 - H281DRAFT_06415 0.74 +0.8
15,695 - H281DRAFT_06415 0.74 -0.3
15,695 - H281DRAFT_06415 0.74 +1.2
15,695 - H281DRAFT_06415 0.74 +0.5
15,758 + H281DRAFT_06415 0.82 -0.4
15,759 - H281DRAFT_06415 0.82 +0.4
15,810 + H281DRAFT_06415 0.89 +0.2
15,810 + H281DRAFT_06415 0.89 +0.6
15,811 - H281DRAFT_06415 0.89 +1.0
15,836 - +1.0
15,957 + -0.3
15,957 + -1.0
15,957 + +0.4
15,957 + -0.4
15,958 - +0.2
15,961 - H281DRAFT_06416 0.10 +0.3
15,961 - H281DRAFT_06416 0.10 -0.5
15,961 - H281DRAFT_06416 0.10 -1.1
15,987 + H281DRAFT_06416 0.15 -0.2
16,088 - H281DRAFT_06416 0.34 +0.4
16,101 + H281DRAFT_06416 0.37 +0.3
16,101 + H281DRAFT_06416 0.37 -0.6
16,300 + H281DRAFT_06416 0.74 -0.6
16,300 + H281DRAFT_06416 0.74 +0.9
16,300 + H281DRAFT_06416 0.74 +0.7
16,301 - H281DRAFT_06416 0.75 +0.0
16,301 - H281DRAFT_06416 0.75 -1.3
16,417 + -0.2
16,417 + -0.1
16,417 + -0.2
16,417 + +0.1
16,417 + -0.3
16,462 + -0.9
16,497 + +0.3
16,523 + +0.3
16,523 + -0.0
16,524 - +0.0
16,557 + +0.2
16,578 + +0.5
16,578 + +0.3
16,578 + +0.3
16,578 + -0.3
16,579 - +0.3
16,730 - -0.5
16,730 - +0.4
16,733 + -0.1
16,757 + -0.3
16,757 + +0.7
16,940 - H281DRAFT_06417 0.18 -0.1
17,018 + H281DRAFT_06417 0.25 +1.3
17,060 + H281DRAFT_06417 0.29 +0.5
17,061 - H281DRAFT_06417 0.29 +0.0
17,061 - H281DRAFT_06417 0.29 +0.5
17,081 + H281DRAFT_06417 0.31 -0.4
17,082 - H281DRAFT_06417 0.31 +0.0
17,082 - H281DRAFT_06417 0.31 +0.1
17,089 + H281DRAFT_06417 0.32 +0.7
17,089 + H281DRAFT_06417 0.32 -0.2
17,089 + H281DRAFT_06417 0.32 -0.3
17,089 + H281DRAFT_06417 0.32 +1.2
17,089 + H281DRAFT_06417 0.32 +0.0
17,090 - H281DRAFT_06417 0.32 -0.1
17,181 + H281DRAFT_06417 0.40 -1.5
17,182 - H281DRAFT_06417 0.41 +1.7
17,255 + H281DRAFT_06417 0.48 +0.4

Or see this region's nucleotide sequence