Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05673

Experiment: 2-Deoxy-D-Ribose 10 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_05671 and H281DRAFT_05672 are separated by 96 nucleotidesH281DRAFT_05672 and H281DRAFT_05673 are separated by 70 nucleotidesH281DRAFT_05673 and H281DRAFT_05674 are separated by 19 nucleotidesH281DRAFT_05674 and H281DRAFT_05675 are separated by 368 nucleotides H281DRAFT_05671: H281DRAFT_05671 - ubiquinol-cytochrome c reductase cytochrome c1 subunit, at 88,589 to 89,344 _05671 H281DRAFT_05672: H281DRAFT_05672 - RNA polymerase-associated protein, at 89,441 to 90,052 _05672 H281DRAFT_05673: H281DRAFT_05673 - stringent starvation protein B, at 90,123 to 90,641 _05673 H281DRAFT_05674: H281DRAFT_05674 - tRNA_Thr_TGT, at 90,661 to 90,736 _05674 H281DRAFT_05675: H281DRAFT_05675 - Methylase of polypeptide chain release factors, at 91,105 to 92,232 _05675 Position (kb) 90 91Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 89.335 kb on + strandat 89.335 kb on + strandat 89.342 kb on + strandat 89.342 kb on + strandat 89.342 kb on + strandat 90.165 kb on + strandat 90.166 kb on - strandat 90.189 kb on + strand, within H281DRAFT_05673at 90.189 kb on + strand, within H281DRAFT_05673at 90.288 kb on - strand, within H281DRAFT_05673at 90.288 kb on - strand, within H281DRAFT_05673at 90.378 kb on - strand, within H281DRAFT_05673at 90.390 kb on + strand, within H281DRAFT_05673at 90.390 kb on + strand, within H281DRAFT_05673at 90.391 kb on - strand, within H281DRAFT_05673at 90.391 kb on - strand, within H281DRAFT_05673at 90.391 kb on - strand, within H281DRAFT_05673at 90.614 kb on + strandat 90.634 kb on + strandat 90.634 kb on + strandat 90.645 kb on - strandat 90.738 kb on + strandat 90.738 kb on + strandat 90.738 kb on + strandat 90.738 kb on + strandat 90.739 kb on - strandat 90.886 kb on + strandat 90.938 kb on + strandat 90.939 kb on - strandat 90.950 kb on + strandat 90.950 kb on + strandat 90.950 kb on + strandat 90.951 kb on - strandat 90.951 kb on - strandat 90.981 kb on - strandat 90.981 kb on - strandat 90.983 kb on + strandat 90.984 kb on - strandat 90.984 kb on - strandat 91.070 kb on + strandat 91.070 kb on + strandat 91.237 kb on + strand, within H281DRAFT_05675at 91.444 kb on + strand, within H281DRAFT_05675at 91.445 kb on - strand, within H281DRAFT_05675at 91.498 kb on + strand, within H281DRAFT_05675at 91.499 kb on - strand, within H281DRAFT_05675at 91.499 kb on - strand, within H281DRAFT_05675at 91.622 kb on - strand, within H281DRAFT_05675at 91.622 kb on - strand, within H281DRAFT_05675

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose 10 mM (C)
remove
89,335 + -1.3
89,335 + -2.1
89,342 + -1.7
89,342 + -0.5
89,342 + -1.2
90,165 + -0.2
90,166 - -0.9
90,189 + H281DRAFT_05673 0.13 -2.1
90,189 + H281DRAFT_05673 0.13 -0.7
90,288 - H281DRAFT_05673 0.32 +1.3
90,288 - H281DRAFT_05673 0.32 +0.1
90,378 - H281DRAFT_05673 0.49 -2.4
90,390 + H281DRAFT_05673 0.51 +0.7
90,390 + H281DRAFT_05673 0.51 +0.8
90,391 - H281DRAFT_05673 0.52 -0.1
90,391 - H281DRAFT_05673 0.52 +0.2
90,391 - H281DRAFT_05673 0.52 -0.1
90,614 + +3.0
90,634 + +0.2
90,634 + +0.0
90,645 - +2.6
90,738 + +0.4
90,738 + +0.5
90,738 + -0.3
90,738 + +2.3
90,739 - +0.3
90,886 + -0.1
90,938 + +0.8
90,939 - -1.4
90,950 + -0.6
90,950 + +1.0
90,950 + -0.3
90,951 - -1.0
90,951 - +1.7
90,981 - +0.7
90,981 - +0.6
90,983 + -0.3
90,984 - -0.3
90,984 - +1.1
91,070 + +0.8
91,070 + +0.4
91,237 + H281DRAFT_05675 0.12 +0.0
91,444 + H281DRAFT_05675 0.30 +0.7
91,445 - H281DRAFT_05675 0.30 +0.3
91,498 + H281DRAFT_05675 0.35 +3.9
91,499 - H281DRAFT_05675 0.35 -0.5
91,499 - H281DRAFT_05675 0.35 -0.1
91,622 - H281DRAFT_05675 0.46 +0.2
91,622 - H281DRAFT_05675 0.46 -0.1

Or see this region's nucleotide sequence