Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05464

Experiment: 2-Deoxy-D-Ribose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05463 and H281DRAFT_05464 are separated by 177 nucleotidesH281DRAFT_05464 and H281DRAFT_05465 are separated by 248 nucleotidesH281DRAFT_05465 and H281DRAFT_05466 are separated by 84 nucleotides H281DRAFT_05463: H281DRAFT_05463 - acetyl esterase, at 43,450 to 44,244 _05463 H281DRAFT_05464: H281DRAFT_05464 - 4-hydroxyacetophenone monooxygenase, at 44,422 to 46,401 _05464 H281DRAFT_05465: H281DRAFT_05465 - hypothetical protein, at 46,650 to 46,838 _05465 H281DRAFT_05466: H281DRAFT_05466 - Catechol 2,3-dioxygenase, at 46,923 to 47,486 _05466 Position (kb) 44 45 46 47Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 43.506 kb on + strandat 43.507 kb on - strandat 43.604 kb on + strand, within H281DRAFT_05463at 43.605 kb on - strand, within H281DRAFT_05463at 43.733 kb on + strand, within H281DRAFT_05463at 43.733 kb on + strand, within H281DRAFT_05463at 43.733 kb on + strand, within H281DRAFT_05463at 43.733 kb on + strand, within H281DRAFT_05463at 43.734 kb on - strand, within H281DRAFT_05463at 43.734 kb on - strand, within H281DRAFT_05463at 43.734 kb on - strand, within H281DRAFT_05463at 43.797 kb on - strand, within H281DRAFT_05463at 43.965 kb on + strand, within H281DRAFT_05463at 43.966 kb on - strand, within H281DRAFT_05463at 43.966 kb on - strand, within H281DRAFT_05463at 44.144 kb on + strand, within H281DRAFT_05463at 44.144 kb on + strand, within H281DRAFT_05463at 44.144 kb on + strand, within H281DRAFT_05463at 44.145 kb on - strand, within H281DRAFT_05463at 44.145 kb on - strandat 44.152 kb on + strand, within H281DRAFT_05463at 44.153 kb on - strand, within H281DRAFT_05463at 44.380 kb on - strandat 44.380 kb on - strandat 44.380 kb on - strandat 44.384 kb on - strandat 44.384 kb on - strandat 44.384 kb on - strandat 44.391 kb on + strandat 44.392 kb on - strandat 44.529 kb on - strandat 44.618 kb on - strandat 44.720 kb on + strand, within H281DRAFT_05464at 44.747 kb on + strand, within H281DRAFT_05464at 44.747 kb on + strand, within H281DRAFT_05464at 44.747 kb on + strand, within H281DRAFT_05464at 44.748 kb on - strand, within H281DRAFT_05464at 44.748 kb on - strand, within H281DRAFT_05464at 44.748 kb on - strand, within H281DRAFT_05464at 44.748 kb on - strand, within H281DRAFT_05464at 44.886 kb on - strand, within H281DRAFT_05464at 45.239 kb on + strand, within H281DRAFT_05464at 45.239 kb on + strand, within H281DRAFT_05464at 45.239 kb on + strand, within H281DRAFT_05464at 45.290 kb on + strand, within H281DRAFT_05464at 45.293 kb on + strand, within H281DRAFT_05464at 45.293 kb on + strand, within H281DRAFT_05464at 45.294 kb on - strand, within H281DRAFT_05464at 45.294 kb on - strand, within H281DRAFT_05464at 45.339 kb on + strand, within H281DRAFT_05464at 45.689 kb on + strand, within H281DRAFT_05464at 45.794 kb on + strand, within H281DRAFT_05464at 45.794 kb on + strand, within H281DRAFT_05464at 45.795 kb on - strand, within H281DRAFT_05464at 45.991 kb on + strand, within H281DRAFT_05464at 46.191 kb on + strand, within H281DRAFT_05464at 46.383 kb on + strandat 46.383 kb on + strandat 46.383 kb on + strandat 46.384 kb on - strandat 46.384 kb on - strandat 46.386 kb on + strandat 46.386 kb on + strandat 46.387 kb on - strandat 46.806 kb on + strand, within H281DRAFT_05465at 46.806 kb on + strand, within H281DRAFT_05465at 46.807 kb on - strand, within H281DRAFT_05465at 46.807 kb on - strand, within H281DRAFT_05465at 46.807 kb on - strand, within H281DRAFT_05465at 46.807 kb on - strand, within H281DRAFT_05465at 46.807 kb on - strandat 46.807 kb on - strand, within H281DRAFT_05465at 46.807 kb on - strand, within H281DRAFT_05465at 46.922 kb on + strandat 46.922 kb on + strandat 47.010 kb on + strand, within H281DRAFT_05466at 47.010 kb on + strand, within H281DRAFT_05466at 47.010 kb on + strand, within H281DRAFT_05466at 47.011 kb on - strand, within H281DRAFT_05466at 47.319 kb on + strand, within H281DRAFT_05466at 47.320 kb on - strand, within H281DRAFT_05466at 47.338 kb on - strand, within H281DRAFT_05466at 47.371 kb on + strand, within H281DRAFT_05466at 47.371 kb on + strand, within H281DRAFT_05466at 47.378 kb on + strand, within H281DRAFT_05466at 47.378 kb on + strand, within H281DRAFT_05466at 47.378 kb on + strand, within H281DRAFT_05466

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose 10 mM (C)
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43,506 + -1.8
43,507 - +0.2
43,604 + H281DRAFT_05463 0.19 -0.6
43,605 - H281DRAFT_05463 0.19 -0.3
43,733 + H281DRAFT_05463 0.36 -1.0
43,733 + H281DRAFT_05463 0.36 -1.6
43,733 + H281DRAFT_05463 0.36 -0.7
43,733 + H281DRAFT_05463 0.36 +1.6
43,734 - H281DRAFT_05463 0.36 -1.7
43,734 - H281DRAFT_05463 0.36 -0.8
43,734 - H281DRAFT_05463 0.36 -0.9
43,797 - H281DRAFT_05463 0.44 -1.1
43,965 + H281DRAFT_05463 0.65 -0.2
43,966 - H281DRAFT_05463 0.65 -0.5
43,966 - H281DRAFT_05463 0.65 +0.0
44,144 + H281DRAFT_05463 0.87 -0.2
44,144 + H281DRAFT_05463 0.87 -0.3
44,144 + H281DRAFT_05463 0.87 +0.6
44,145 - H281DRAFT_05463 0.87 -0.5
44,145 - +3.0
44,152 + H281DRAFT_05463 0.88 +0.7
44,153 - H281DRAFT_05463 0.88 -1.2
44,380 - +1.0
44,380 - -0.4
44,380 - +0.2
44,384 - +1.4
44,384 - +2.0
44,384 - -0.7
44,391 + +0.3
44,392 - +0.7
44,529 - -0.6
44,618 - -0.2
44,720 + H281DRAFT_05464 0.15 +0.4
44,747 + H281DRAFT_05464 0.16 +1.8
44,747 + H281DRAFT_05464 0.16 -0.2
44,747 + H281DRAFT_05464 0.16 -1.4
44,748 - H281DRAFT_05464 0.16 +0.2
44,748 - H281DRAFT_05464 0.16 +0.8
44,748 - H281DRAFT_05464 0.16 +0.9
44,748 - H281DRAFT_05464 0.16 -0.8
44,886 - H281DRAFT_05464 0.23 +1.3
45,239 + H281DRAFT_05464 0.41 -1.5
45,239 + H281DRAFT_05464 0.41 +1.0
45,239 + H281DRAFT_05464 0.41 -0.1
45,290 + H281DRAFT_05464 0.44 -0.0
45,293 + H281DRAFT_05464 0.44 -0.3
45,293 + H281DRAFT_05464 0.44 -0.9
45,294 - H281DRAFT_05464 0.44 -0.3
45,294 - H281DRAFT_05464 0.44 +0.1
45,339 + H281DRAFT_05464 0.46 +0.5
45,689 + H281DRAFT_05464 0.64 +0.4
45,794 + H281DRAFT_05464 0.69 +0.6
45,794 + H281DRAFT_05464 0.69 +0.6
45,795 - H281DRAFT_05464 0.69 +0.3
45,991 + H281DRAFT_05464 0.79 -0.7
46,191 + H281DRAFT_05464 0.89 +0.7
46,383 + +0.6
46,383 + -0.6
46,383 + -0.2
46,384 - -0.1
46,384 - -0.3
46,386 + +0.3
46,386 + +1.0
46,387 - -1.6
46,806 + H281DRAFT_05465 0.83 +0.4
46,806 + H281DRAFT_05465 0.83 +1.6
46,807 - H281DRAFT_05465 0.83 +1.1
46,807 - H281DRAFT_05465 0.83 +0.2
46,807 - H281DRAFT_05465 0.83 +0.2
46,807 - H281DRAFT_05465 0.83 +1.0
46,807 - +2.6
46,807 - H281DRAFT_05465 0.83 +1.6
46,807 - H281DRAFT_05465 0.83 +0.5
46,922 + -1.2
46,922 + -2.8
47,010 + H281DRAFT_05466 0.15 +0.2
47,010 + H281DRAFT_05466 0.15 -1.1
47,010 + H281DRAFT_05466 0.15 -0.1
47,011 - H281DRAFT_05466 0.16 -0.5
47,319 + H281DRAFT_05466 0.70 +2.1
47,320 - H281DRAFT_05466 0.70 -1.0
47,338 - H281DRAFT_05466 0.74 -0.9
47,371 + H281DRAFT_05466 0.79 -0.4
47,371 + H281DRAFT_05466 0.79 -0.6
47,378 + H281DRAFT_05466 0.81 -0.1
47,378 + H281DRAFT_05466 0.81 +0.6
47,378 + H281DRAFT_05466 0.81 -0.5

Or see this region's nucleotide sequence