Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05333

Experiment: 2-Deoxy-D-Ribose 10 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_05331 and H281DRAFT_05332 overlap by 26 nucleotidesH281DRAFT_05332 and H281DRAFT_05333 overlap by 4 nucleotidesH281DRAFT_05333 and H281DRAFT_05334 are separated by 70 nucleotides H281DRAFT_05331: H281DRAFT_05331 - hypothetical protein, at 81,841 to 82,395 _05331 H281DRAFT_05332: H281DRAFT_05332 - Pimeloyl-ACP methyl ester carboxylesterase, at 82,370 to 83,314 _05332 H281DRAFT_05333: H281DRAFT_05333 - hypothetical protein, at 83,311 to 84,192 _05333 H281DRAFT_05334: H281DRAFT_05334 - Short-chain dehydrogenase, at 84,263 to 85,171 _05334 Position (kb) 83 84 85Strain fitness (log2 ratio) -1 0 1at 82.451 kb on + strandat 82.521 kb on + strand, within H281DRAFT_05332at 82.943 kb on - strand, within H281DRAFT_05332at 83.146 kb on - strand, within H281DRAFT_05332at 83.516 kb on + strand, within H281DRAFT_05333at 83.641 kb on - strand, within H281DRAFT_05333at 83.651 kb on + strand, within H281DRAFT_05333at 83.680 kb on - strand, within H281DRAFT_05333at 83.817 kb on - strand, within H281DRAFT_05333at 83.948 kb on + strand, within H281DRAFT_05333at 83.967 kb on + strand, within H281DRAFT_05333at 84.169 kb on + strandat 84.743 kb on - strand, within H281DRAFT_05334

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose 10 mM (C)
remove
82,451 + +0.7
82,521 + H281DRAFT_05332 0.16 +0.2
82,943 - H281DRAFT_05332 0.61 -0.1
83,146 - H281DRAFT_05332 0.82 +0.6
83,516 + H281DRAFT_05333 0.23 -1.2
83,641 - H281DRAFT_05333 0.37 -0.6
83,651 + H281DRAFT_05333 0.39 -0.6
83,680 - H281DRAFT_05333 0.42 +1.3
83,817 - H281DRAFT_05333 0.57 -0.2
83,948 + H281DRAFT_05333 0.72 -0.5
83,967 + H281DRAFT_05333 0.74 -0.4
84,169 + +0.7
84,743 - H281DRAFT_05334 0.53 -0.7

Or see this region's nucleotide sequence