Experiment: 2-Deoxy-D-Ribose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05062 and H281DRAFT_05063 are separated by 75 nucleotides H281DRAFT_05063 and H281DRAFT_05064 are separated by 93 nucleotides
H281DRAFT_05062: H281DRAFT_05062 - MFS transporter, putative metabolite:H+ symporter, at 1,216 to 2,655
_05062
H281DRAFT_05063: H281DRAFT_05063 - 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit, at 2,731 to 4,689
_05063
H281DRAFT_05064: H281DRAFT_05064 - DNA-binding transcriptional regulator, LysR family, at 4,783 to 5,682
_05064
Position (kb) 2
3
4
5 Strain fitness (log2 ratio) -2
-1
0
1
2 at 2.081 kb on - strand, within H281DRAFT_05062 at 2.140 kb on - strand, within H281DRAFT_05062 at 2.165 kb on + strand, within H281DRAFT_05062 at 2.165 kb on + strand, within H281DRAFT_05062 at 2.165 kb on + strand, within H281DRAFT_05062 at 2.165 kb on + strand, within H281DRAFT_05062 at 2.166 kb on - strand, within H281DRAFT_05062 at 2.166 kb on - strand, within H281DRAFT_05062 at 2.570 kb on - strand at 2.706 kb on + strand at 2.717 kb on - strand at 2.991 kb on - strand, within H281DRAFT_05063 at 2.991 kb on - strand, within H281DRAFT_05063 at 3.020 kb on - strand, within H281DRAFT_05063 at 3.086 kb on + strand, within H281DRAFT_05063 at 3.117 kb on + strand, within H281DRAFT_05063 at 3.138 kb on + strand, within H281DRAFT_05063 at 3.139 kb on - strand, within H281DRAFT_05063 at 3.139 kb on - strand, within H281DRAFT_05063 at 3.139 kb on - strand, within H281DRAFT_05063 at 3.986 kb on + strand, within H281DRAFT_05063 at 4.257 kb on + strand, within H281DRAFT_05063 at 4.499 kb on + strand at 4.693 kb on + strand at 4.764 kb on - strand at 4.797 kb on + strand at 4.807 kb on + strand at 5.011 kb on - strand, within H281DRAFT_05064 at 5.011 kb on - strand, within H281DRAFT_05064 at 5.281 kb on + strand, within H281DRAFT_05064 at 5.351 kb on - strand, within H281DRAFT_05064 at 5.351 kb on - strand, within H281DRAFT_05064 at 5.391 kb on - strand, within H281DRAFT_05064 at 5.596 kb on + strand at 5.686 kb on + strand at 5.687 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose 10 mM (C) remove 2,081 - H281DRAFT_05062 0.60 -0.2 2,140 - H281DRAFT_05062 0.64 +0.8 2,165 + H281DRAFT_05062 0.66 +0.1 2,165 + H281DRAFT_05062 0.66 +1.3 2,165 + H281DRAFT_05062 0.66 -0.6 2,165 + H281DRAFT_05062 0.66 +1.0 2,166 - H281DRAFT_05062 0.66 -0.9 2,166 - H281DRAFT_05062 0.66 +0.4 2,570 - +0.5 2,706 + -0.2 2,717 - +0.1 2,991 - H281DRAFT_05063 0.13 -0.6 2,991 - H281DRAFT_05063 0.13 -0.6 3,020 - H281DRAFT_05063 0.15 -0.9 3,086 + H281DRAFT_05063 0.18 -1.2 3,117 + H281DRAFT_05063 0.20 -1.0 3,138 + H281DRAFT_05063 0.21 +0.3 3,139 - H281DRAFT_05063 0.21 -0.2 3,139 - H281DRAFT_05063 0.21 -2.5 3,139 - H281DRAFT_05063 0.21 +0.6 3,986 + H281DRAFT_05063 0.64 +2.7 4,257 + H281DRAFT_05063 0.78 +1.6 4,499 + -0.0 4,693 + +0.8 4,764 - +0.9 4,797 + -0.1 4,807 + +0.0 5,011 - H281DRAFT_05064 0.25 +0.5 5,011 - H281DRAFT_05064 0.25 -0.5 5,281 + H281DRAFT_05064 0.55 +0.3 5,351 - H281DRAFT_05064 0.63 +0.3 5,351 - H281DRAFT_05064 0.63 +0.0 5,391 - H281DRAFT_05064 0.68 +1.9 5,596 + -0.1 5,686 + -0.1 5,687 - +0.9
Or see this region's nucleotide sequence