Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03987

Experiment: 2-Deoxy-D-Ribose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03986 and H281DRAFT_03987 are separated by 80 nucleotidesH281DRAFT_03987 and H281DRAFT_03988 are separated by 187 nucleotides H281DRAFT_03986: H281DRAFT_03986 - Putative Ca2+/H+ antiporter, TMEM165/GDT1 family, at 92,608 to 93,225 _03986 H281DRAFT_03987: H281DRAFT_03987 - protein of unknown function (DUF4136), at 93,306 to 94,016 _03987 H281DRAFT_03988: H281DRAFT_03988 - alanyl aminopeptidase. Metallo peptidase. MEROPS family M01, at 94,204 to 96,978 _03988 Position (kb) 93 94 95Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 92.360 kb on + strandat 92.419 kb on + strandat 92.420 kb on - strandat 92.420 kb on - strandat 92.766 kb on + strand, within H281DRAFT_03986at 92.875 kb on - strand, within H281DRAFT_03986at 92.922 kb on - strand, within H281DRAFT_03986at 93.425 kb on + strand, within H281DRAFT_03987at 93.478 kb on + strand, within H281DRAFT_03987at 93.478 kb on + strand, within H281DRAFT_03987at 93.479 kb on - strand, within H281DRAFT_03987at 93.479 kb on - strand, within H281DRAFT_03987at 93.479 kb on - strand, within H281DRAFT_03987at 93.479 kb on - strand, within H281DRAFT_03987at 93.536 kb on - strand, within H281DRAFT_03987at 93.653 kb on - strand, within H281DRAFT_03987at 93.694 kb on + strand, within H281DRAFT_03987at 93.694 kb on + strand, within H281DRAFT_03987at 93.694 kb on + strand, within H281DRAFT_03987at 93.695 kb on - strand, within H281DRAFT_03987at 93.695 kb on - strand, within H281DRAFT_03987at 93.695 kb on - strand, within H281DRAFT_03987at 93.697 kb on + strand, within H281DRAFT_03987at 93.697 kb on + strand, within H281DRAFT_03987at 93.698 kb on - strand, within H281DRAFT_03987at 93.698 kb on - strand, within H281DRAFT_03987at 93.739 kb on + strand, within H281DRAFT_03987at 93.757 kb on + strand, within H281DRAFT_03987at 93.757 kb on + strand, within H281DRAFT_03987at 93.826 kb on + strand, within H281DRAFT_03987at 93.827 kb on - strand, within H281DRAFT_03987at 93.827 kb on - strand, within H281DRAFT_03987at 93.827 kb on - strand, within H281DRAFT_03987at 93.937 kb on + strand, within H281DRAFT_03987at 93.938 kb on - strand, within H281DRAFT_03987at 93.938 kb on - strand, within H281DRAFT_03987at 93.938 kb on - strand, within H281DRAFT_03987at 93.938 kb on - strand, within H281DRAFT_03987at 93.938 kb on - strand, within H281DRAFT_03987at 94.055 kb on + strandat 94.055 kb on + strandat 94.056 kb on - strandat 94.056 kb on - strandat 94.061 kb on - strandat 94.064 kb on + strandat 94.064 kb on + strandat 94.110 kb on + strandat 94.110 kb on + strandat 94.110 kb on + strandat 94.111 kb on - strandat 94.200 kb on + strandat 94.201 kb on - strandat 94.201 kb on - strandat 94.316 kb on - strandat 94.446 kb on - strandat 94.610 kb on + strand, within H281DRAFT_03988at 94.612 kb on + strand, within H281DRAFT_03988at 94.612 kb on + strand, within H281DRAFT_03988at 94.613 kb on - strand, within H281DRAFT_03988at 94.672 kb on + strand, within H281DRAFT_03988at 94.672 kb on + strand, within H281DRAFT_03988at 94.673 kb on - strand, within H281DRAFT_03988at 94.673 kb on - strand, within H281DRAFT_03988at 94.673 kb on - strand, within H281DRAFT_03988at 94.673 kb on - strand, within H281DRAFT_03988at 94.705 kb on + strand, within H281DRAFT_03988at 94.705 kb on + strand, within H281DRAFT_03988at 94.705 kb on + strand, within H281DRAFT_03988at 94.705 kb on + strand, within H281DRAFT_03988at 94.837 kb on + strand, within H281DRAFT_03988at 94.838 kb on - strand, within H281DRAFT_03988at 94.922 kb on + strand, within H281DRAFT_03988

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose 10 mM (C)
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92,360 + -0.7
92,419 + +0.4
92,420 - -1.6
92,420 - +0.6
92,766 + H281DRAFT_03986 0.26 +0.6
92,875 - H281DRAFT_03986 0.43 -0.3
92,922 - H281DRAFT_03986 0.51 +1.1
93,425 + H281DRAFT_03987 0.17 +0.6
93,478 + H281DRAFT_03987 0.24 -0.5
93,478 + H281DRAFT_03987 0.24 -0.3
93,479 - H281DRAFT_03987 0.24 -1.8
93,479 - H281DRAFT_03987 0.24 +3.5
93,479 - H281DRAFT_03987 0.24 -0.5
93,479 - H281DRAFT_03987 0.24 +2.1
93,536 - H281DRAFT_03987 0.32 +0.5
93,653 - H281DRAFT_03987 0.49 -1.7
93,694 + H281DRAFT_03987 0.55 +0.4
93,694 + H281DRAFT_03987 0.55 +0.3
93,694 + H281DRAFT_03987 0.55 +0.1
93,695 - H281DRAFT_03987 0.55 +0.0
93,695 - H281DRAFT_03987 0.55 +1.5
93,695 - H281DRAFT_03987 0.55 +0.2
93,697 + H281DRAFT_03987 0.55 -1.7
93,697 + H281DRAFT_03987 0.55 -1.0
93,698 - H281DRAFT_03987 0.55 -0.2
93,698 - H281DRAFT_03987 0.55 +1.0
93,739 + H281DRAFT_03987 0.61 -0.1
93,757 + H281DRAFT_03987 0.63 -0.1
93,757 + H281DRAFT_03987 0.63 +0.4
93,826 + H281DRAFT_03987 0.73 +0.3
93,827 - H281DRAFT_03987 0.73 -1.1
93,827 - H281DRAFT_03987 0.73 +0.2
93,827 - H281DRAFT_03987 0.73 -0.8
93,937 + H281DRAFT_03987 0.89 -0.1
93,938 - H281DRAFT_03987 0.89 +0.1
93,938 - H281DRAFT_03987 0.89 -3.7
93,938 - H281DRAFT_03987 0.89 +0.7
93,938 - H281DRAFT_03987 0.89 -0.3
93,938 - H281DRAFT_03987 0.89 +0.7
94,055 + +0.7
94,055 + -0.1
94,056 - -0.4
94,056 - +1.6
94,061 - -2.5
94,064 + +0.2
94,064 + +2.1
94,110 + -1.0
94,110 + +0.1
94,110 + +0.8
94,111 - +0.5
94,200 + +0.6
94,201 - +0.1
94,201 - -0.1
94,316 - -0.6
94,446 - -1.1
94,610 + H281DRAFT_03988 0.15 +0.1
94,612 + H281DRAFT_03988 0.15 -0.5
94,612 + H281DRAFT_03988 0.15 -3.3
94,613 - H281DRAFT_03988 0.15 +0.6
94,672 + H281DRAFT_03988 0.17 +0.9
94,672 + H281DRAFT_03988 0.17 -0.1
94,673 - H281DRAFT_03988 0.17 -0.9
94,673 - H281DRAFT_03988 0.17 +0.6
94,673 - H281DRAFT_03988 0.17 -0.5
94,673 - H281DRAFT_03988 0.17 -0.5
94,705 + H281DRAFT_03988 0.18 +0.1
94,705 + H281DRAFT_03988 0.18 +0.7
94,705 + H281DRAFT_03988 0.18 -0.8
94,705 + H281DRAFT_03988 0.18 -1.1
94,837 + H281DRAFT_03988 0.23 +0.2
94,838 - H281DRAFT_03988 0.23 -3.0
94,922 + H281DRAFT_03988 0.26 -1.0

Or see this region's nucleotide sequence