Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03250

Experiment: 2-Deoxy-D-Ribose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03248 and H281DRAFT_03249 are separated by 55 nucleotidesH281DRAFT_03249 and H281DRAFT_03250 are separated by 23 nucleotidesH281DRAFT_03250 and H281DRAFT_03251 overlap by 4 nucleotidesH281DRAFT_03251 and H281DRAFT_03252 are separated by 99 nucleotides H281DRAFT_03248: H281DRAFT_03248 - Tetratricopeptide (TPR) repeat, at 305,424 to 307,574 _03248 H281DRAFT_03249: H281DRAFT_03249 - hypothetical protein, at 307,630 to 308,046 _03249 H281DRAFT_03250: H281DRAFT_03250 - Uncharacterized conserved protein YndB, AHSA1/START domain, at 308,070 to 308,597 _03250 H281DRAFT_03251: H281DRAFT_03251 - transcriptional regulator, ArsR family, at 308,594 to 308,929 _03251 H281DRAFT_03252: H281DRAFT_03252 - 2,4-dihydroxyhept-2-enedioate aldolase (EC 4.1.2.-), at 309,029 to 309,832 _03252 Position (kb) 308 309Strain fitness (log2 ratio) -1 0 1at 307.117 kb on + strand, within H281DRAFT_03248at 307.199 kb on - strand, within H281DRAFT_03248at 307.468 kb on - strandat 307.842 kb on - strand, within H281DRAFT_03249at 308.248 kb on - strand, within H281DRAFT_03250at 308.930 kb on - strandat 309.030 kb on + strandat 309.075 kb on + strandat 309.075 kb on + strandat 309.159 kb on + strand, within H281DRAFT_03252at 309.555 kb on - strand, within H281DRAFT_03252

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose 10 mM (C)
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307,117 + H281DRAFT_03248 0.79 -0.5
307,199 - H281DRAFT_03248 0.83 -1.1
307,468 - -1.7
307,842 - H281DRAFT_03249 0.51 -0.6
308,248 - H281DRAFT_03250 0.34 +0.3
308,930 - +0.1
309,030 + -0.9
309,075 + -1.6
309,075 + +0.0
309,159 + H281DRAFT_03252 0.16 -0.5
309,555 - H281DRAFT_03252 0.65 -0.6

Or see this region's nucleotide sequence