Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02931

Experiment: 2-Deoxy-D-Ribose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02929 and H281DRAFT_02930 are separated by 281 nucleotidesH281DRAFT_02930 and H281DRAFT_02931 are separated by 44 nucleotidesH281DRAFT_02931 and H281DRAFT_02932 are separated by 481 nucleotides H281DRAFT_02929: H281DRAFT_02929 - Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase, at 540,330 to 541,841 _02929 H281DRAFT_02930: H281DRAFT_02930 - Superinfection immunity protein, at 542,123 to 542,434 _02930 H281DRAFT_02931: H281DRAFT_02931 - Uncharacterized conserved protein YodC, DUF2158 family, at 542,479 to 542,748 _02931 H281DRAFT_02932: H281DRAFT_02932 - Major Facilitator Superfamily protein, at 543,230 to 543,679 _02932 Position (kb) 542 543Strain fitness (log2 ratio) -3 -2 -1 0 1at 541.627 kb on + strand, within H281DRAFT_02929at 541.684 kb on + strand, within H281DRAFT_02929at 541.778 kb on + strandat 541.844 kb on + strandat 541.905 kb on + strandat 541.906 kb on - strandat 541.906 kb on - strandat 542.019 kb on - strandat 542.122 kb on + strandat 542.122 kb on + strandat 542.123 kb on - strandat 542.123 kb on - strandat 542.123 kb on - strandat 542.123 kb on - strandat 542.123 kb on - strandat 542.645 kb on + strand, within H281DRAFT_02931at 542.646 kb on - strand, within H281DRAFT_02931at 542.649 kb on + strand, within H281DRAFT_02931at 542.649 kb on + strand, within H281DRAFT_02931at 542.650 kb on - strand, within H281DRAFT_02931at 542.650 kb on - strand, within H281DRAFT_02931at 542.722 kb on - strandat 542.722 kb on - strandat 542.748 kb on + strandat 542.748 kb on + strandat 542.749 kb on - strandat 542.749 kb on - strandat 542.771 kb on - strandat 542.812 kb on - strandat 543.000 kb on + strandat 543.000 kb on + strandat 543.001 kb on - strandat 543.082 kb on - strandat 543.082 kb on - strandat 543.177 kb on + strandat 543.201 kb on + strandat 543.416 kb on - strand, within H281DRAFT_02932at 543.461 kb on + strand, within H281DRAFT_02932at 543.461 kb on + strand, within H281DRAFT_02932at 543.558 kb on - strand, within H281DRAFT_02932at 543.571 kb on - strand, within H281DRAFT_02932at 543.571 kb on - strand, within H281DRAFT_02932at 543.630 kb on + strand, within H281DRAFT_02932at 543.631 kb on - strand, within H281DRAFT_02932at 543.631 kb on - strand, within H281DRAFT_02932at 543.631 kb on - strand, within H281DRAFT_02932at 543.633 kb on + strand, within H281DRAFT_02932at 543.633 kb on + strand, within H281DRAFT_02932at 543.634 kb on - strand, within H281DRAFT_02932at 543.634 kb on - strand, within H281DRAFT_02932

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose 10 mM (C)
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541,627 + H281DRAFT_02929 0.86 +0.3
541,684 + H281DRAFT_02929 0.90 -2.8
541,778 + -0.1
541,844 + +0.1
541,905 + -0.9
541,906 - -0.1
541,906 - -0.8
542,019 - -0.3
542,122 + -1.9
542,122 + +0.0
542,123 - +0.8
542,123 - +1.0
542,123 - +0.7
542,123 - +0.2
542,123 - -0.1
542,645 + H281DRAFT_02931 0.61 +0.9
542,646 - H281DRAFT_02931 0.62 -0.9
542,649 + H281DRAFT_02931 0.63 +0.3
542,649 + H281DRAFT_02931 0.63 +0.7
542,650 - H281DRAFT_02931 0.63 +0.3
542,650 - H281DRAFT_02931 0.63 -0.7
542,722 - -0.3
542,722 - +0.4
542,748 + +0.5
542,748 + +0.2
542,749 - +0.3
542,749 - -0.0
542,771 - +0.6
542,812 - -0.2
543,000 + +0.9
543,000 + -0.3
543,001 - +0.7
543,082 - -2.5
543,082 - -0.2
543,177 + -1.6
543,201 + -0.4
543,416 - H281DRAFT_02932 0.41 +1.0
543,461 + H281DRAFT_02932 0.51 +0.4
543,461 + H281DRAFT_02932 0.51 -0.4
543,558 - H281DRAFT_02932 0.73 +0.5
543,571 - H281DRAFT_02932 0.76 -0.3
543,571 - H281DRAFT_02932 0.76 -0.3
543,630 + H281DRAFT_02932 0.89 -0.2
543,631 - H281DRAFT_02932 0.89 +0.2
543,631 - H281DRAFT_02932 0.89 +0.0
543,631 - H281DRAFT_02932 0.89 +0.3
543,633 + H281DRAFT_02932 0.90 +1.7
543,633 + H281DRAFT_02932 0.90 +0.2
543,634 - H281DRAFT_02932 0.90 +0.5
543,634 - H281DRAFT_02932 0.90 -0.0

Or see this region's nucleotide sequence