Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02623

Experiment: 2-Deoxy-D-Ribose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02621 and H281DRAFT_02622 overlap by 4 nucleotidesH281DRAFT_02622 and H281DRAFT_02623 overlap by 20 nucleotidesH281DRAFT_02623 and H281DRAFT_02624 overlap by 4 nucleotidesH281DRAFT_02624 and H281DRAFT_02625 are separated by 18 nucleotides H281DRAFT_02621: H281DRAFT_02621 - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, at 197,850 to 199,193 _02621 H281DRAFT_02622: H281DRAFT_02622 - hypothetical protein, at 199,190 to 199,357 _02622 H281DRAFT_02623: H281DRAFT_02623 - aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A, at 199,338 to 200,678 _02623 H281DRAFT_02624: H281DRAFT_02624 - 4-carboxymuconolactone decarboxylase, at 200,675 to 201,229 _02624 H281DRAFT_02625: H281DRAFT_02625 - amino acid ABC transporter substrate-binding protein, PAAT family, at 201,248 to 202,153 _02625 Position (kb) 199 200 201Strain fitness (log2 ratio) -2 -1 0 1 2at 198.759 kb on + strand, within H281DRAFT_02621at 198.760 kb on - strand, within H281DRAFT_02621at 198.760 kb on - strand, within H281DRAFT_02621at 200.011 kb on - strand, within H281DRAFT_02623at 200.177 kb on + strand, within H281DRAFT_02623at 200.225 kb on - strand, within H281DRAFT_02623at 200.325 kb on + strand, within H281DRAFT_02623at 201.083 kb on - strand, within H281DRAFT_02624at 201.083 kb on - strand, within H281DRAFT_02624at 201.360 kb on + strand, within H281DRAFT_02625at 201.421 kb on + strand, within H281DRAFT_02625at 201.422 kb on - strand, within H281DRAFT_02625at 201.552 kb on + strand, within H281DRAFT_02625at 201.552 kb on + strand, within H281DRAFT_02625at 201.553 kb on - strand, within H281DRAFT_02625at 201.553 kb on - strand, within H281DRAFT_02625at 201.614 kb on - strand, within H281DRAFT_02625at 201.617 kb on - strand, within H281DRAFT_02625

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose 10 mM (C)
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198,759 + H281DRAFT_02621 0.68 +0.2
198,760 - H281DRAFT_02621 0.68 -0.9
198,760 - H281DRAFT_02621 0.68 +0.6
200,011 - H281DRAFT_02623 0.50 -0.8
200,177 + H281DRAFT_02623 0.63 -0.8
200,225 - H281DRAFT_02623 0.66 +0.0
200,325 + H281DRAFT_02623 0.74 -0.3
201,083 - H281DRAFT_02624 0.74 +0.5
201,083 - H281DRAFT_02624 0.74 +0.7
201,360 + H281DRAFT_02625 0.12 +0.3
201,421 + H281DRAFT_02625 0.19 +0.5
201,422 - H281DRAFT_02625 0.19 -1.2
201,552 + H281DRAFT_02625 0.34 -0.6
201,552 + H281DRAFT_02625 0.34 +1.9
201,553 - H281DRAFT_02625 0.34 -2.6
201,553 - H281DRAFT_02625 0.34 -0.1
201,614 - H281DRAFT_02625 0.40 +0.5
201,617 - H281DRAFT_02625 0.41 -0.3

Or see this region's nucleotide sequence