Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02584

Experiment: 2-Deoxy-D-Ribose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02582 and H281DRAFT_02583 are separated by 544 nucleotidesH281DRAFT_02583 and H281DRAFT_02584 overlap by 4 nucleotidesH281DRAFT_02584 and H281DRAFT_02585 overlap by 19 nucleotides H281DRAFT_02582: H281DRAFT_02582 - Arabinose efflux permease, at 156,557 to 157,957 _02582 H281DRAFT_02583: H281DRAFT_02583 - DNA-binding protein HU-beta, at 158,502 to 158,729 _02583 H281DRAFT_02584: H281DRAFT_02584 - hypothetical protein, at 158,726 to 158,845 _02584 H281DRAFT_02585: H281DRAFT_02585 - FAD/FMN-containing dehydrogenase, at 158,827 to 160,212 _02585 Position (kb) 158 159Strain fitness (log2 ratio) -2 -1 0 1at 158.262 kb on + strandat 158.344 kb on - strandat 158.344 kb on - strandat 158.475 kb on + strandat 158.804 kb on + strand, within H281DRAFT_02584at 158.915 kb on + strandat 159.295 kb on + strand, within H281DRAFT_02585at 159.599 kb on - strand, within H281DRAFT_02585at 159.652 kb on + strand, within H281DRAFT_02585

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose 10 mM (C)
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158,262 + -0.6
158,344 - +0.2
158,344 - -2.0
158,475 + -2.2
158,804 + H281DRAFT_02584 0.65 -0.2
158,915 + -0.9
159,295 + H281DRAFT_02585 0.34 +0.2
159,599 - H281DRAFT_02585 0.56 +0.3
159,652 + H281DRAFT_02585 0.60 +0.5

Or see this region's nucleotide sequence