Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02140

Experiment: 2-Deoxy-D-Ribose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02139 and H281DRAFT_02140 are separated by 1 nucleotidesH281DRAFT_02140 and H281DRAFT_02141 are separated by 856 nucleotides H281DRAFT_02139: H281DRAFT_02139 - type I restriction enzyme, R subunit, at 277,428 to 280,721 _02139 H281DRAFT_02140: H281DRAFT_02140 - hypothetical protein, at 280,723 to 281,451 _02140 H281DRAFT_02141: H281DRAFT_02141 - hypothetical protein, at 282,308 to 282,736 _02141 Position (kb) 280 281 282Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 279.738 kb on + strand, within H281DRAFT_02139at 279.739 kb on - strand, within H281DRAFT_02139at 279.739 kb on - strand, within H281DRAFT_02139at 279.829 kb on + strand, within H281DRAFT_02139at 279.829 kb on + strand, within H281DRAFT_02139at 279.841 kb on - strand, within H281DRAFT_02139at 279.900 kb on + strand, within H281DRAFT_02139at 279.900 kb on + strand, within H281DRAFT_02139at 279.900 kb on + strand, within H281DRAFT_02139at 279.900 kb on + strand, within H281DRAFT_02139at 279.901 kb on - strand, within H281DRAFT_02139at 279.901 kb on - strand, within H281DRAFT_02139at 279.901 kb on - strand, within H281DRAFT_02139at 279.903 kb on - strand, within H281DRAFT_02139at 279.953 kb on + strand, within H281DRAFT_02139at 279.953 kb on + strand, within H281DRAFT_02139at 279.954 kb on - strand, within H281DRAFT_02139at 279.999 kb on + strand, within H281DRAFT_02139at 279.999 kb on + strand, within H281DRAFT_02139at 280.001 kb on + strand, within H281DRAFT_02139at 280.001 kb on + strand, within H281DRAFT_02139at 280.002 kb on - strand, within H281DRAFT_02139at 280.002 kb on - strand, within H281DRAFT_02139at 280.002 kb on - strand, within H281DRAFT_02139at 280.072 kb on - strand, within H281DRAFT_02139at 280.072 kb on - strand, within H281DRAFT_02139at 280.117 kb on + strand, within H281DRAFT_02139at 280.152 kb on + strand, within H281DRAFT_02139at 280.152 kb on + strand, within H281DRAFT_02139at 280.373 kb on + strand, within H281DRAFT_02139at 280.374 kb on - strand, within H281DRAFT_02139at 280.722 kb on + strandat 280.732 kb on + strandat 280.732 kb on + strandat 280.733 kb on - strandat 280.733 kb on - strandat 280.733 kb on - strandat 280.733 kb on - strandat 280.758 kb on + strandat 280.758 kb on + strandat 280.758 kb on + strandat 280.759 kb on - strandat 280.794 kb on + strandat 280.802 kb on + strand, within H281DRAFT_02140at 280.947 kb on - strand, within H281DRAFT_02140at 280.947 kb on - strand, within H281DRAFT_02140at 280.947 kb on - strand, within H281DRAFT_02140at 280.960 kb on + strand, within H281DRAFT_02140at 280.961 kb on - strand, within H281DRAFT_02140at 280.984 kb on + strand, within H281DRAFT_02140at 280.984 kb on + strand, within H281DRAFT_02140at 280.985 kb on - strand, within H281DRAFT_02140at 281.104 kb on + strand, within H281DRAFT_02140at 281.105 kb on - strand, within H281DRAFT_02140at 281.105 kb on - strand, within H281DRAFT_02140at 281.105 kb on - strand, within H281DRAFT_02140at 281.105 kb on - strand, within H281DRAFT_02140at 281.292 kb on + strand, within H281DRAFT_02140at 281.308 kb on + strand, within H281DRAFT_02140at 281.308 kb on + strand, within H281DRAFT_02140at 281.309 kb on - strand, within H281DRAFT_02140at 281.309 kb on - strand, within H281DRAFT_02140at 281.309 kb on - strand, within H281DRAFT_02140at 281.309 kb on - strand, within H281DRAFT_02140at 281.309 kb on - strand, within H281DRAFT_02140at 281.365 kb on + strand, within H281DRAFT_02140at 281.421 kb on + strandat 281.438 kb on + strandat 281.452 kb on + strandat 281.452 kb on + strandat 281.452 kb on + strandat 281.453 kb on - strandat 281.597 kb on + strandat 281.598 kb on - strandat 281.598 kb on - strandat 281.637 kb on + strandat 281.638 kb on - strandat 281.659 kb on - strandat 281.747 kb on - strandat 281.828 kb on - strandat 281.854 kb on - strandat 281.854 kb on - strandat 281.942 kb on + strandat 282.008 kb on + strandat 282.008 kb on + strandat 282.008 kb on + strandat 282.009 kb on - strandat 282.015 kb on + strandat 282.082 kb on + strandat 282.149 kb on - strandat 282.176 kb on - strandat 282.176 kb on - strandat 282.184 kb on + strandat 282.185 kb on - strandat 282.430 kb on - strand, within H281DRAFT_02141

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose 10 mM (C)
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279,738 + H281DRAFT_02139 0.70 -0.4
279,739 - H281DRAFT_02139 0.70 +1.8
279,739 - H281DRAFT_02139 0.70 +0.0
279,829 + H281DRAFT_02139 0.73 +0.3
279,829 + H281DRAFT_02139 0.73 -1.0
279,841 - H281DRAFT_02139 0.73 +0.9
279,900 + H281DRAFT_02139 0.75 -1.5
279,900 + H281DRAFT_02139 0.75 -0.1
279,900 + H281DRAFT_02139 0.75 +0.2
279,900 + H281DRAFT_02139 0.75 -0.2
279,901 - H281DRAFT_02139 0.75 -0.9
279,901 - H281DRAFT_02139 0.75 +0.8
279,901 - H281DRAFT_02139 0.75 +0.4
279,903 - H281DRAFT_02139 0.75 +0.2
279,953 + H281DRAFT_02139 0.77 +1.1
279,953 + H281DRAFT_02139 0.77 -0.5
279,954 - H281DRAFT_02139 0.77 -0.5
279,999 + H281DRAFT_02139 0.78 -0.3
279,999 + H281DRAFT_02139 0.78 +0.6
280,001 + H281DRAFT_02139 0.78 +0.4
280,001 + H281DRAFT_02139 0.78 -0.0
280,002 - H281DRAFT_02139 0.78 -0.2
280,002 - H281DRAFT_02139 0.78 -0.5
280,002 - H281DRAFT_02139 0.78 +0.6
280,072 - H281DRAFT_02139 0.80 +1.2
280,072 - H281DRAFT_02139 0.80 -0.5
280,117 + H281DRAFT_02139 0.82 +1.2
280,152 + H281DRAFT_02139 0.83 -2.1
280,152 + H281DRAFT_02139 0.83 +0.7
280,373 + H281DRAFT_02139 0.89 +0.0
280,374 - H281DRAFT_02139 0.89 +2.2
280,722 + +0.9
280,732 + +0.7
280,732 + +0.1
280,733 - +1.0
280,733 - -0.5
280,733 - +3.5
280,733 - +1.2
280,758 + -1.1
280,758 + -0.3
280,758 + +0.4
280,759 - -1.4
280,794 + -0.4
280,802 + H281DRAFT_02140 0.11 -0.7
280,947 - H281DRAFT_02140 0.31 +0.2
280,947 - H281DRAFT_02140 0.31 -3.1
280,947 - H281DRAFT_02140 0.31 -0.5
280,960 + H281DRAFT_02140 0.33 -0.1
280,961 - H281DRAFT_02140 0.33 +0.3
280,984 + H281DRAFT_02140 0.36 +0.7
280,984 + H281DRAFT_02140 0.36 +2.2
280,985 - H281DRAFT_02140 0.36 +0.7
281,104 + H281DRAFT_02140 0.52 -0.6
281,105 - H281DRAFT_02140 0.52 +0.6
281,105 - H281DRAFT_02140 0.52 -0.0
281,105 - H281DRAFT_02140 0.52 +0.7
281,105 - H281DRAFT_02140 0.52 -3.1
281,292 + H281DRAFT_02140 0.78 -3.3
281,308 + H281DRAFT_02140 0.80 -0.3
281,308 + H281DRAFT_02140 0.80 -1.0
281,309 - H281DRAFT_02140 0.80 -0.3
281,309 - H281DRAFT_02140 0.80 -0.0
281,309 - H281DRAFT_02140 0.80 -0.1
281,309 - H281DRAFT_02140 0.80 +1.2
281,309 - H281DRAFT_02140 0.80 -0.9
281,365 + H281DRAFT_02140 0.88 -0.4
281,421 + -0.0
281,438 + +0.1
281,452 + +0.4
281,452 + -0.5
281,452 + -0.3
281,453 - +1.7
281,597 + +0.5
281,598 - -1.1
281,598 - -0.2
281,637 + -1.6
281,638 - -0.1
281,659 - -0.1
281,747 - -0.0
281,828 - +0.2
281,854 - +1.9
281,854 - -1.4
281,942 + -0.4
282,008 + +0.0
282,008 + -2.1
282,008 + -0.1
282,009 - -0.3
282,015 + +0.7
282,082 + +1.3
282,149 - +0.3
282,176 - +0.2
282,176 - -0.6
282,184 + -0.4
282,185 - +0.8
282,430 - H281DRAFT_02141 0.28 -0.2

Or see this region's nucleotide sequence