Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01992

Experiment: 2-Deoxy-D-Ribose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01990 and H281DRAFT_01991 are separated by 128 nucleotidesH281DRAFT_01991 and H281DRAFT_01992 are separated by 31 nucleotidesH281DRAFT_01992 and H281DRAFT_01993 are separated by 291 nucleotides H281DRAFT_01990: H281DRAFT_01990 - cytochrome c oxidase subunit 3, at 108,594 to 109,451 _01990 H281DRAFT_01991: H281DRAFT_01991 - Protein of unknown function (DUF2970), at 109,580 to 109,789 _01991 H281DRAFT_01992: H281DRAFT_01992 - cytochrome c oxidase assembly protein subunit 11, at 109,821 to 110,435 _01992 H281DRAFT_01993: H281DRAFT_01993 - cytochrome c oxidase subunit 1, at 110,727 to 112,340 _01993 Position (kb) 109 110 111Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 108.830 kb on + strand, within H281DRAFT_01990at 108.831 kb on - strand, within H281DRAFT_01990at 108.831 kb on - strand, within H281DRAFT_01990at 108.832 kb on + strand, within H281DRAFT_01990at 108.832 kb on + strand, within H281DRAFT_01990at 108.833 kb on - strand, within H281DRAFT_01990at 108.833 kb on - strand, within H281DRAFT_01990at 108.917 kb on + strand, within H281DRAFT_01990at 108.918 kb on - strand, within H281DRAFT_01990at 108.918 kb on - strand, within H281DRAFT_01990at 109.093 kb on + strand, within H281DRAFT_01990at 109.094 kb on - strand, within H281DRAFT_01990at 109.135 kb on + strand, within H281DRAFT_01990at 109.231 kb on + strand, within H281DRAFT_01990at 109.231 kb on + strand, within H281DRAFT_01990at 109.283 kb on + strand, within H281DRAFT_01990at 109.284 kb on - strand, within H281DRAFT_01990at 109.284 kb on - strand, within H281DRAFT_01990at 109.284 kb on - strand, within H281DRAFT_01990at 109.423 kb on + strandat 109.424 kb on - strandat 109.426 kb on + strandat 109.426 kb on + strandat 109.426 kb on + strandat 109.517 kb on + strandat 109.536 kb on - strandat 109.916 kb on - strand, within H281DRAFT_01992at 110.015 kb on + strand, within H281DRAFT_01992at 110.044 kb on + strand, within H281DRAFT_01992at 110.045 kb on - strand, within H281DRAFT_01992at 110.045 kb on - strand, within H281DRAFT_01992at 110.069 kb on - strand, within H281DRAFT_01992at 110.069 kb on - strand, within H281DRAFT_01992at 110.069 kb on - strand, within H281DRAFT_01992at 110.122 kb on + strand, within H281DRAFT_01992at 110.122 kb on + strand, within H281DRAFT_01992at 110.123 kb on - strand, within H281DRAFT_01992at 110.123 kb on - strand, within H281DRAFT_01992at 110.123 kb on - strand, within H281DRAFT_01992at 110.123 kb on - strand, within H281DRAFT_01992at 110.123 kb on - strand, within H281DRAFT_01992at 110.123 kb on - strand, within H281DRAFT_01992at 110.123 kb on - strand, within H281DRAFT_01992at 110.246 kb on + strand, within H281DRAFT_01992at 110.247 kb on - strand, within H281DRAFT_01992at 110.320 kb on + strand, within H281DRAFT_01992at 110.321 kb on - strand, within H281DRAFT_01992at 110.461 kb on + strandat 110.462 kb on - strandat 110.462 kb on - strandat 110.718 kb on - strandat 110.729 kb on - strandat 110.881 kb on + strandat 110.881 kb on + strandat 110.881 kb on + strandat 110.882 kb on - strandat 111.067 kb on + strand, within H281DRAFT_01993at 111.067 kb on + strand, within H281DRAFT_01993at 111.067 kb on + strand, within H281DRAFT_01993at 111.067 kb on + strand, within H281DRAFT_01993at 111.068 kb on - strand, within H281DRAFT_01993at 111.097 kb on + strand, within H281DRAFT_01993at 111.100 kb on + strand, within H281DRAFT_01993at 111.100 kb on + strand, within H281DRAFT_01993at 111.145 kb on + strandat 111.146 kb on - strand, within H281DRAFT_01993at 111.146 kb on - strand, within H281DRAFT_01993at 111.169 kb on + strand, within H281DRAFT_01993at 111.170 kb on - strand, within H281DRAFT_01993at 111.170 kb on - strand, within H281DRAFT_01993at 111.174 kb on - strand, within H281DRAFT_01993at 111.305 kb on + strand, within H281DRAFT_01993at 111.361 kb on + strand, within H281DRAFT_01993

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose 10 mM (C)
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108,830 + H281DRAFT_01990 0.28 +0.7
108,831 - H281DRAFT_01990 0.28 -0.4
108,831 - H281DRAFT_01990 0.28 -0.6
108,832 + H281DRAFT_01990 0.28 -0.1
108,832 + H281DRAFT_01990 0.28 -0.3
108,833 - H281DRAFT_01990 0.28 -2.0
108,833 - H281DRAFT_01990 0.28 +1.7
108,917 + H281DRAFT_01990 0.38 +1.1
108,918 - H281DRAFT_01990 0.38 -0.2
108,918 - H281DRAFT_01990 0.38 -0.4
109,093 + H281DRAFT_01990 0.58 -1.0
109,094 - H281DRAFT_01990 0.58 -2.0
109,135 + H281DRAFT_01990 0.63 -2.0
109,231 + H281DRAFT_01990 0.74 -3.6
109,231 + H281DRAFT_01990 0.74 -3.7
109,283 + H281DRAFT_01990 0.80 -2.4
109,284 - H281DRAFT_01990 0.80 -1.7
109,284 - H281DRAFT_01990 0.80 -0.2
109,284 - H281DRAFT_01990 0.80 -1.2
109,423 + -0.4
109,424 - -3.1
109,426 + +1.1
109,426 + -1.9
109,426 + -1.7
109,517 + -2.3
109,536 - +2.3
109,916 - H281DRAFT_01992 0.15 +0.0
110,015 + H281DRAFT_01992 0.32 -3.5
110,044 + H281DRAFT_01992 0.36 -2.8
110,045 - H281DRAFT_01992 0.36 +0.8
110,045 - H281DRAFT_01992 0.36 +0.5
110,069 - H281DRAFT_01992 0.40 +0.1
110,069 - H281DRAFT_01992 0.40 -0.7
110,069 - H281DRAFT_01992 0.40 -0.1
110,122 + H281DRAFT_01992 0.49 -2.2
110,122 + H281DRAFT_01992 0.49 -2.8
110,123 - H281DRAFT_01992 0.49 +0.4
110,123 - H281DRAFT_01992 0.49 -0.0
110,123 - H281DRAFT_01992 0.49 -0.3
110,123 - H281DRAFT_01992 0.49 -0.4
110,123 - H281DRAFT_01992 0.49 -2.0
110,123 - H281DRAFT_01992 0.49 -2.0
110,123 - H281DRAFT_01992 0.49 -1.5
110,246 + H281DRAFT_01992 0.69 +0.3
110,247 - H281DRAFT_01992 0.69 -0.4
110,320 + H281DRAFT_01992 0.81 -1.6
110,321 - H281DRAFT_01992 0.81 +0.5
110,461 + -2.3
110,462 - +0.2
110,462 - -2.5
110,718 - -0.4
110,729 - -0.1
110,881 + +1.1
110,881 + -1.3
110,881 + -3.8
110,882 - -2.9
111,067 + H281DRAFT_01993 0.21 -2.4
111,067 + H281DRAFT_01993 0.21 -1.2
111,067 + H281DRAFT_01993 0.21 -3.4
111,067 + H281DRAFT_01993 0.21 +1.1
111,068 - H281DRAFT_01993 0.21 -2.5
111,097 + H281DRAFT_01993 0.23 -0.4
111,100 + H281DRAFT_01993 0.23 -1.4
111,100 + H281DRAFT_01993 0.23 -2.7
111,145 + +0.1
111,146 - H281DRAFT_01993 0.26 -1.2
111,146 - H281DRAFT_01993 0.26 -1.2
111,169 + H281DRAFT_01993 0.27 +1.1
111,170 - H281DRAFT_01993 0.27 -3.1
111,170 - H281DRAFT_01993 0.27 -0.8
111,174 - H281DRAFT_01993 0.28 -0.8
111,305 + H281DRAFT_01993 0.36 -3.4
111,361 + H281DRAFT_01993 0.39 -2.6

Or see this region's nucleotide sequence