Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00112

Experiment: 2-Deoxy-D-Ribose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00111 and H281DRAFT_00112 are separated by 223 nucleotidesH281DRAFT_00112 and H281DRAFT_00113 are separated by 42 nucleotides H281DRAFT_00111: H281DRAFT_00111 - RND family efflux transporter, MFP subunit, at 117,739 to 118,962 _00111 H281DRAFT_00112: H281DRAFT_00112 - amino acid/amide ABC transporter substrate-binding protein, HAAT family, at 119,186 to 120,346 _00112 H281DRAFT_00113: H281DRAFT_00113 - transcriptional regulator, LysR family, at 120,389 to 121,330 _00113 Position (kb) 119 120 121Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 118.213 kb on + strand, within H281DRAFT_00111at 118.487 kb on + strand, within H281DRAFT_00111at 118.634 kb on + strand, within H281DRAFT_00111at 118.634 kb on + strand, within H281DRAFT_00111at 118.767 kb on + strand, within H281DRAFT_00111at 118.958 kb on - strandat 119.117 kb on + strandat 119.118 kb on - strandat 119.118 kb on - strandat 119.255 kb on + strandat 119.406 kb on + strand, within H281DRAFT_00112at 119.455 kb on - strand, within H281DRAFT_00112at 119.761 kb on + strand, within H281DRAFT_00112at 119.762 kb on - strand, within H281DRAFT_00112at 119.838 kb on + strand, within H281DRAFT_00112at 119.892 kb on + strand, within H281DRAFT_00112at 119.892 kb on + strand, within H281DRAFT_00112at 120.156 kb on + strand, within H281DRAFT_00112at 120.214 kb on + strand, within H281DRAFT_00112at 120.221 kb on + strand, within H281DRAFT_00112at 120.483 kb on + strandat 120.483 kb on + strandat 120.484 kb on - strand, within H281DRAFT_00113at 120.484 kb on - strand, within H281DRAFT_00113at 120.865 kb on + strand, within H281DRAFT_00113at 120.867 kb on + strand, within H281DRAFT_00113at 120.867 kb on + strand, within H281DRAFT_00113at 120.867 kb on + strand, within H281DRAFT_00113at 121.078 kb on + strand, within H281DRAFT_00113at 121.249 kb on + strandat 121.249 kb on + strandat 121.251 kb on + strandat 121.252 kb on - strandat 121.332 kb on + strandat 121.333 kb on - strandat 121.334 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose 10 mM (C)
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118,213 + H281DRAFT_00111 0.39 +0.6
118,487 + H281DRAFT_00111 0.61 -0.0
118,634 + H281DRAFT_00111 0.73 +1.6
118,634 + H281DRAFT_00111 0.73 +0.5
118,767 + H281DRAFT_00111 0.84 +0.7
118,958 - -0.3
119,117 + -0.8
119,118 - +0.3
119,118 - -0.4
119,255 + +0.5
119,406 + H281DRAFT_00112 0.19 -0.3
119,455 - H281DRAFT_00112 0.23 +0.4
119,761 + H281DRAFT_00112 0.50 +0.1
119,762 - H281DRAFT_00112 0.50 +0.3
119,838 + H281DRAFT_00112 0.56 +0.1
119,892 + H281DRAFT_00112 0.61 -0.5
119,892 + H281DRAFT_00112 0.61 +2.0
120,156 + H281DRAFT_00112 0.84 +0.3
120,214 + H281DRAFT_00112 0.89 -0.1
120,221 + H281DRAFT_00112 0.89 -0.2
120,483 + -4.1
120,483 + -4.8
120,484 - H281DRAFT_00113 0.10 -3.2
120,484 - H281DRAFT_00113 0.10 -3.1
120,865 + H281DRAFT_00113 0.51 -3.8
120,867 + H281DRAFT_00113 0.51 -3.3
120,867 + H281DRAFT_00113 0.51 -4.2
120,867 + H281DRAFT_00113 0.51 -1.3
121,078 + H281DRAFT_00113 0.73 -1.8
121,249 + -0.9
121,249 + -0.2
121,251 + -0.9
121,252 - -2.8
121,332 + +0.9
121,333 - -0.3
121,334 + +0.0

Or see this region's nucleotide sequence