Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3442 and Dsui_3443 are separated by 82 nucleotides Dsui_3443 and Dsui_3444 are separated by 282 nucleotides
Dsui_3442: Dsui_3442 - NADH dehydrogenase, FAD-containing subunit, at 3,699,577 to 3,700,851
_3442
Dsui_3443: Dsui_3443 - RND family efflux transporter, MFP subunit, at 3,700,934 to 3,702,013
_3443
Dsui_3444: Dsui_3444 - phospho-2-dehydro-3-deoxyheptonate aldolase, at 3,702,296 to 3,703,393
_3444
Position (kb)
3700
3701
3702
3703 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 3700.034 kb on - strand at 3700.046 kb on - strand, within Dsui_3442 at 3700.169 kb on - strand, within Dsui_3442 at 3700.184 kb on - strand at 3700.227 kb on - strand, within Dsui_3442 at 3700.257 kb on + strand, within Dsui_3442 at 3700.265 kb on - strand, within Dsui_3442 at 3700.286 kb on - strand, within Dsui_3442 at 3700.302 kb on - strand, within Dsui_3442 at 3700.302 kb on - strand, within Dsui_3442 at 3700.404 kb on + strand, within Dsui_3442 at 3700.530 kb on - strand, within Dsui_3442 at 3700.635 kb on + strand at 3700.637 kb on - strand, within Dsui_3442 at 3700.694 kb on + strand at 3700.718 kb on - strand, within Dsui_3442 at 3700.909 kb on + strand at 3701.078 kb on + strand, within Dsui_3443 at 3701.086 kb on - strand, within Dsui_3443 at 3701.242 kb on - strand, within Dsui_3443 at 3701.373 kb on - strand at 3701.469 kb on - strand at 3701.524 kb on - strand, within Dsui_3443 at 3701.568 kb on + strand at 3701.574 kb on + strand, within Dsui_3443 at 3701.579 kb on + strand, within Dsui_3443 at 3701.587 kb on - strand at 3701.587 kb on - strand, within Dsui_3443 at 3701.625 kb on - strand, within Dsui_3443 at 3701.651 kb on + strand, within Dsui_3443 at 3701.852 kb on - strand at 3701.913 kb on + strand at 3701.932 kb on - strand at 3702.187 kb on - strand at 3702.279 kb on + strand at 3702.286 kb on + strand at 3702.347 kb on - strand at 3702.528 kb on + strand, within Dsui_3444 at 3702.579 kb on - strand, within Dsui_3444 at 3702.624 kb on + strand, within Dsui_3444 at 3702.654 kb on - strand, within Dsui_3444 at 3702.677 kb on - strand, within Dsui_3444 at 3702.775 kb on + strand, within Dsui_3444 at 3702.781 kb on - strand, within Dsui_3444 at 3702.783 kb on + strand, within Dsui_3444 at 3702.783 kb on - strand, within Dsui_3444 at 3702.961 kb on + strand, within Dsui_3444 at 3702.980 kb on + strand, within Dsui_3444
Per-strain Table
Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours remove 3,700,034 - -2.0 3,700,046 - Dsui_3442 0.37 -2.2 3,700,169 - Dsui_3442 0.46 -0.8 3,700,184 - -2.0 3,700,227 - Dsui_3442 0.51 -2.4 3,700,257 + Dsui_3442 0.53 -0.1 3,700,265 - Dsui_3442 0.54 -1.5 3,700,286 - Dsui_3442 0.56 +0.1 3,700,302 - Dsui_3442 0.57 -0.0 3,700,302 - Dsui_3442 0.57 -0.2 3,700,404 + Dsui_3442 0.65 -0.3 3,700,530 - Dsui_3442 0.75 -0.2 3,700,635 + -3.5 3,700,637 - Dsui_3442 0.83 +1.8 3,700,694 + +0.4 3,700,718 - Dsui_3442 0.89 -0.4 3,700,909 + +0.0 3,701,078 + Dsui_3443 0.13 -3.4 3,701,086 - Dsui_3443 0.14 -3.5 3,701,242 - Dsui_3443 0.29 -1.7 3,701,373 - -5.1 3,701,469 - -0.3 3,701,524 - Dsui_3443 0.55 -2.8 3,701,568 + -1.0 3,701,574 + Dsui_3443 0.59 -4.4 3,701,579 + Dsui_3443 0.60 -1.2 3,701,587 - -2.5 3,701,587 - Dsui_3443 0.60 -1.6 3,701,625 - Dsui_3443 0.64 -1.2 3,701,651 + Dsui_3443 0.66 -5.1 3,701,852 - -0.4 3,701,913 + -3.5 3,701,932 - -1.3 3,702,187 - -1.8 3,702,279 + +3.1 3,702,286 + +0.9 3,702,347 - -1.2 3,702,528 + Dsui_3444 0.21 +0.6 3,702,579 - Dsui_3444 0.26 -1.2 3,702,624 + Dsui_3444 0.30 +0.8 3,702,654 - Dsui_3444 0.33 -2.8 3,702,677 - Dsui_3444 0.35 -2.2 3,702,775 + Dsui_3444 0.44 +1.7 3,702,781 - Dsui_3444 0.44 -0.5 3,702,783 + Dsui_3444 0.44 -0.6 3,702,783 - Dsui_3444 0.44 -1.1 3,702,961 + Dsui_3444 0.61 +1.2 3,702,980 + Dsui_3444 0.62 -0.1
Or see this region's nucleotide sequence