Strain Fitness in Dechlorosoma suillum PS around Dsui_3443

Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3442 and Dsui_3443 are separated by 82 nucleotidesDsui_3443 and Dsui_3444 are separated by 282 nucleotides Dsui_3442: Dsui_3442 - NADH dehydrogenase, FAD-containing subunit, at 3,699,577 to 3,700,851 _3442 Dsui_3443: Dsui_3443 - RND family efflux transporter, MFP subunit, at 3,700,934 to 3,702,013 _3443 Dsui_3444: Dsui_3444 - phospho-2-dehydro-3-deoxyheptonate aldolase, at 3,702,296 to 3,703,393 _3444 Position (kb) 3700 3701 3702 3703Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 3700.034 kb on - strandat 3700.046 kb on - strand, within Dsui_3442at 3700.169 kb on - strand, within Dsui_3442at 3700.184 kb on - strandat 3700.227 kb on - strand, within Dsui_3442at 3700.257 kb on + strand, within Dsui_3442at 3700.265 kb on - strand, within Dsui_3442at 3700.286 kb on - strand, within Dsui_3442at 3700.302 kb on - strand, within Dsui_3442at 3700.302 kb on - strand, within Dsui_3442at 3700.404 kb on + strand, within Dsui_3442at 3700.530 kb on - strand, within Dsui_3442at 3700.635 kb on + strandat 3700.637 kb on - strand, within Dsui_3442at 3700.694 kb on + strandat 3700.718 kb on - strand, within Dsui_3442at 3700.909 kb on + strandat 3701.078 kb on + strand, within Dsui_3443at 3701.086 kb on - strand, within Dsui_3443at 3701.242 kb on - strand, within Dsui_3443at 3701.373 kb on - strandat 3701.469 kb on - strandat 3701.524 kb on - strand, within Dsui_3443at 3701.568 kb on + strandat 3701.574 kb on + strand, within Dsui_3443at 3701.579 kb on + strand, within Dsui_3443at 3701.587 kb on - strandat 3701.587 kb on - strand, within Dsui_3443at 3701.625 kb on - strand, within Dsui_3443at 3701.651 kb on + strand, within Dsui_3443at 3701.852 kb on - strandat 3701.913 kb on + strandat 3701.932 kb on - strandat 3702.187 kb on - strandat 3702.279 kb on + strandat 3702.286 kb on + strandat 3702.347 kb on - strandat 3702.528 kb on + strand, within Dsui_3444at 3702.579 kb on - strand, within Dsui_3444at 3702.624 kb on + strand, within Dsui_3444at 3702.654 kb on - strand, within Dsui_3444at 3702.677 kb on - strand, within Dsui_3444at 3702.775 kb on + strand, within Dsui_3444at 3702.781 kb on - strand, within Dsui_3444at 3702.783 kb on + strand, within Dsui_3444at 3702.783 kb on - strand, within Dsui_3444at 3702.961 kb on + strand, within Dsui_3444at 3702.980 kb on + strand, within Dsui_3444

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Per-strain Table

Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
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3,700,034 - -2.0
3,700,046 - Dsui_3442 0.37 -2.2
3,700,169 - Dsui_3442 0.46 -0.8
3,700,184 - -2.0
3,700,227 - Dsui_3442 0.51 -2.4
3,700,257 + Dsui_3442 0.53 -0.1
3,700,265 - Dsui_3442 0.54 -1.5
3,700,286 - Dsui_3442 0.56 +0.1
3,700,302 - Dsui_3442 0.57 -0.0
3,700,302 - Dsui_3442 0.57 -0.2
3,700,404 + Dsui_3442 0.65 -0.3
3,700,530 - Dsui_3442 0.75 -0.2
3,700,635 + -3.5
3,700,637 - Dsui_3442 0.83 +1.8
3,700,694 + +0.4
3,700,718 - Dsui_3442 0.89 -0.4
3,700,909 + +0.0
3,701,078 + Dsui_3443 0.13 -3.4
3,701,086 - Dsui_3443 0.14 -3.5
3,701,242 - Dsui_3443 0.29 -1.7
3,701,373 - -5.1
3,701,469 - -0.3
3,701,524 - Dsui_3443 0.55 -2.8
3,701,568 + -1.0
3,701,574 + Dsui_3443 0.59 -4.4
3,701,579 + Dsui_3443 0.60 -1.2
3,701,587 - -2.5
3,701,587 - Dsui_3443 0.60 -1.6
3,701,625 - Dsui_3443 0.64 -1.2
3,701,651 + Dsui_3443 0.66 -5.1
3,701,852 - -0.4
3,701,913 + -3.5
3,701,932 - -1.3
3,702,187 - -1.8
3,702,279 + +3.1
3,702,286 + +0.9
3,702,347 - -1.2
3,702,528 + Dsui_3444 0.21 +0.6
3,702,579 - Dsui_3444 0.26 -1.2
3,702,624 + Dsui_3444 0.30 +0.8
3,702,654 - Dsui_3444 0.33 -2.8
3,702,677 - Dsui_3444 0.35 -2.2
3,702,775 + Dsui_3444 0.44 +1.7
3,702,781 - Dsui_3444 0.44 -0.5
3,702,783 + Dsui_3444 0.44 -0.6
3,702,783 - Dsui_3444 0.44 -1.1
3,702,961 + Dsui_3444 0.61 +1.2
3,702,980 + Dsui_3444 0.62 -0.1

Or see this region's nucleotide sequence