Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3310 and Dsui_3311 are separated by 8 nucleotides Dsui_3311 and Dsui_3312 are separated by 25 nucleotides Dsui_3312 and Dsui_3313 are separated by 63 nucleotides Dsui_3313 and Dsui_3314 are separated by 108 nucleotides Dsui_3314 and Dsui_3315 are separated by 10 nucleotides
Dsui_3310: Dsui_3310 - hypothetical protein, at 3,553,179 to 3,553,655
_3310
Dsui_3311: Dsui_3311 - uncharacterized protein SCO1/SenC/PrrC, at 3,553,664 to 3,554,260
_3311
Dsui_3312: Dsui_3312 - hypothetical protein, at 3,554,286 to 3,554,783
_3312
Dsui_3313: Dsui_3313 - hypothetical protein, at 3,554,847 to 3,555,242
_3313
Dsui_3314: Dsui_3314 - biopolymer transport protein, at 3,555,351 to 3,555,767
_3314
Dsui_3315: Dsui_3315 - biopolymer transport protein, at 3,555,778 to 3,556,497
_3315
Position (kb)
3554
3555 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3553.662 kb on - strand at 3553.671 kb on + strand at 3553.671 kb on + strand at 3553.671 kb on + strand at 3553.701 kb on - strand at 3553.880 kb on - strand, within Dsui_3311 at 3553.948 kb on + strand, within Dsui_3311 at 3553.949 kb on + strand, within Dsui_3311 at 3553.949 kb on + strand, within Dsui_3311 at 3553.956 kb on - strand, within Dsui_3311 at 3553.956 kb on - strand, within Dsui_3311 at 3553.956 kb on - strand, within Dsui_3311 at 3553.960 kb on + strand, within Dsui_3311 at 3553.987 kb on - strand, within Dsui_3311 at 3554.039 kb on + strand, within Dsui_3311 at 3554.039 kb on + strand, within Dsui_3311 at 3554.080 kb on + strand, within Dsui_3311 at 3554.135 kb on - strand, within Dsui_3311 at 3554.140 kb on - strand, within Dsui_3311 at 3554.245 kb on + strand at 3554.253 kb on - strand at 3554.321 kb on + strand at 3554.326 kb on + strand at 3554.326 kb on + strand at 3554.397 kb on + strand, within Dsui_3312 at 3554.496 kb on - strand, within Dsui_3312 at 3554.623 kb on + strand, within Dsui_3312 at 3554.629 kb on + strand, within Dsui_3312 at 3554.631 kb on - strand, within Dsui_3312 at 3554.643 kb on - strand, within Dsui_3312 at 3554.659 kb on + strand, within Dsui_3312 at 3554.770 kb on - strand at 3554.777 kb on + strand at 3554.845 kb on + strand at 3554.853 kb on - strand at 3554.855 kb on + strand at 3554.855 kb on + strand at 3554.863 kb on - strand at 3554.869 kb on + strand at 3554.911 kb on - strand, within Dsui_3313 at 3555.015 kb on - strand, within Dsui_3313 at 3555.080 kb on + strand at 3555.105 kb on + strand, within Dsui_3313 at 3555.113 kb on - strand, within Dsui_3313 at 3555.225 kb on - strand at 3555.251 kb on + strand at 3555.260 kb on - strand at 3555.277 kb on + strand at 3555.337 kb on + strand at 3555.342 kb on + strand at 3555.561 kb on + strand, within Dsui_3314 at 3555.589 kb on - strand, within Dsui_3314 at 3555.696 kb on + strand, within Dsui_3314
Per-strain Table
Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours remove 3,553,662 - -0.9 3,553,671 + +0.1 3,553,671 + +1.0 3,553,671 + -0.2 3,553,701 - +2.1 3,553,880 - Dsui_3311 0.36 -0.9 3,553,948 + Dsui_3311 0.48 +0.0 3,553,949 + Dsui_3311 0.48 -0.3 3,553,949 + Dsui_3311 0.48 +0.7 3,553,956 - Dsui_3311 0.49 -1.0 3,553,956 - Dsui_3311 0.49 +0.1 3,553,956 - Dsui_3311 0.49 -1.2 3,553,960 + Dsui_3311 0.50 +0.2 3,553,987 - Dsui_3311 0.54 -3.6 3,554,039 + Dsui_3311 0.63 +0.2 3,554,039 + Dsui_3311 0.63 -0.8 3,554,080 + Dsui_3311 0.70 +1.6 3,554,135 - Dsui_3311 0.79 -0.1 3,554,140 - Dsui_3311 0.80 -1.1 3,554,245 + +0.2 3,554,253 - +1.1 3,554,321 + +0.3 3,554,326 + -0.3 3,554,326 + +0.2 3,554,397 + Dsui_3312 0.22 +0.1 3,554,496 - Dsui_3312 0.42 -0.5 3,554,623 + Dsui_3312 0.68 -0.8 3,554,629 + Dsui_3312 0.69 +0.8 3,554,631 - Dsui_3312 0.69 -0.4 3,554,643 - Dsui_3312 0.72 +0.3 3,554,659 + Dsui_3312 0.75 -1.1 3,554,770 - -1.4 3,554,777 + -0.4 3,554,845 + -2.8 3,554,853 - +0.7 3,554,855 + +0.7 3,554,855 + +0.9 3,554,863 - +1.3 3,554,869 + +1.2 3,554,911 - Dsui_3313 0.16 +0.8 3,555,015 - Dsui_3313 0.42 +0.5 3,555,080 + -0.3 3,555,105 + Dsui_3313 0.65 +0.5 3,555,113 - Dsui_3313 0.67 +0.8 3,555,225 - +1.2 3,555,251 + -0.3 3,555,260 - +1.4 3,555,277 + -1.7 3,555,337 + -1.2 3,555,342 + -2.8 3,555,561 + Dsui_3314 0.50 -0.2 3,555,589 - Dsui_3314 0.57 +1.2 3,555,696 + Dsui_3314 0.83 -1.2
Or see this region's nucleotide sequence