Strain Fitness in Dechlorosoma suillum PS around Dsui_3138

Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_3136 and Dsui_3137 are separated by 89 nucleotidesDsui_3137 and Dsui_3138 are separated by 83 nucleotidesDsui_3138 and Dsui_3139 are separated by 21 nucleotides Dsui_3136: Dsui_3136 - GTP-binding protein HflX, at 3,358,234 to 3,359,421 _3136 Dsui_3137: Dsui_3137 - RNA chaperone Hfq, at 3,359,511 to 3,359,750 _3137 Dsui_3138: Dsui_3138 - ribosome-associated GTPase EngA, at 3,359,834 to 3,361,219 _3138 Dsui_3139: Dsui_3139 - outer membrane assembly lipoprotein YfgL, at 3,361,241 to 3,362,389 _3139 Position (kb) 3359 3360 3361 3362Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3358.883 kb on - strand, within Dsui_3136at 3358.915 kb on - strand, within Dsui_3136at 3358.979 kb on + strand, within Dsui_3136at 3358.990 kb on + strand, within Dsui_3136at 3359.115 kb on - strand, within Dsui_3136at 3359.119 kb on - strand, within Dsui_3136at 3359.125 kb on - strand, within Dsui_3136at 3359.151 kb on + strand, within Dsui_3136at 3359.249 kb on - strand, within Dsui_3136at 3359.280 kb on - strand, within Dsui_3136at 3359.299 kb on + strand, within Dsui_3136at 3359.333 kb on + strandat 3359.333 kb on + strandat 3359.367 kb on - strandat 3359.367 kb on - strandat 3359.367 kb on - strandat 3359.532 kb on - strandat 3359.753 kb on - strandat 3359.826 kb on - strandat 3359.901 kb on - strandat 3359.901 kb on - strandat 3359.901 kb on - strandat 3361.257 kb on - strandat 3361.400 kb on - strand, within Dsui_3139at 3361.523 kb on - strand, within Dsui_3139at 3361.617 kb on - strand, within Dsui_3139at 3361.657 kb on - strand, within Dsui_3139at 3361.659 kb on - strand, within Dsui_3139at 3361.715 kb on - strand, within Dsui_3139at 3361.721 kb on - strand, within Dsui_3139at 3362.148 kb on - strand, within Dsui_3139at 3362.209 kb on - strand, within Dsui_3139

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
remove
3,358,883 - Dsui_3136 0.55 +0.8
3,358,915 - Dsui_3136 0.57 -0.3
3,358,979 + Dsui_3136 0.63 +1.1
3,358,990 + Dsui_3136 0.64 -1.4
3,359,115 - Dsui_3136 0.74 +1.3
3,359,119 - Dsui_3136 0.74 +1.7
3,359,125 - Dsui_3136 0.75 +1.6
3,359,151 + Dsui_3136 0.77 +0.3
3,359,249 - Dsui_3136 0.85 +1.0
3,359,280 - Dsui_3136 0.88 +0.5
3,359,299 + Dsui_3136 0.90 +0.1
3,359,333 + -0.7
3,359,333 + -0.5
3,359,367 - +1.5
3,359,367 - +2.2
3,359,367 - +1.6
3,359,532 - -0.5
3,359,753 - -1.0
3,359,826 - +0.9
3,359,901 - -0.5
3,359,901 - +1.1
3,359,901 - +0.8
3,361,257 - +0.2
3,361,400 - Dsui_3139 0.14 -4.1
3,361,523 - Dsui_3139 0.25 -3.6
3,361,617 - Dsui_3139 0.33 -3.8
3,361,657 - Dsui_3139 0.36 -4.0
3,361,659 - Dsui_3139 0.36 -4.5
3,361,715 - Dsui_3139 0.41 -4.3
3,361,721 - Dsui_3139 0.42 -3.1
3,362,148 - Dsui_3139 0.79 -3.5
3,362,209 - Dsui_3139 0.84 -3.8

Or see this region's nucleotide sequence