Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2898 and Dsui_2899 are separated by 42 nucleotides Dsui_2899 and Dsui_2900 overlap by 4 nucleotides Dsui_2900 and Dsui_2901 are separated by 62 nucleotides
Dsui_2898: Dsui_2898 - yjeF-like protein, hydroxyethylthiazole kinase-related protein, at 3,100,605 to 3,102,113
_2898
Dsui_2899: Dsui_2899 - putative permease, DMT superfamily, at 3,102,156 to 3,103,034
_2899
Dsui_2900: Dsui_2900 - glutamate synthase family protein, at 3,103,031 to 3,104,515
_2900
Dsui_2901: Dsui_2901 - nicotinate-nucleotide pyrophosphorylase, at 3,104,578 to 3,105,462
_2901
Position (kb)
3103
3104
3105 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3102.045 kb on - strand at 3102.224 kb on + strand at 3102.236 kb on + strand at 3102.270 kb on + strand, within Dsui_2899 at 3102.333 kb on - strand at 3102.344 kb on - strand at 3102.433 kb on + strand, within Dsui_2899 at 3102.479 kb on + strand, within Dsui_2899 at 3102.581 kb on + strand, within Dsui_2899 at 3102.618 kb on + strand, within Dsui_2899 at 3102.618 kb on + strand, within Dsui_2899 at 3102.620 kb on - strand at 3102.623 kb on + strand, within Dsui_2899 at 3102.643 kb on + strand, within Dsui_2899 at 3102.724 kb on - strand at 3102.787 kb on + strand, within Dsui_2899 at 3102.795 kb on - strand at 3102.797 kb on - strand, within Dsui_2899 at 3102.800 kb on - strand at 3103.050 kb on + strand at 3103.203 kb on + strand, within Dsui_2900 at 3103.211 kb on - strand, within Dsui_2900 at 3103.312 kb on + strand, within Dsui_2900 at 3103.320 kb on - strand, within Dsui_2900 at 3103.520 kb on + strand, within Dsui_2900 at 3103.961 kb on - strand, within Dsui_2900 at 3103.992 kb on - strand, within Dsui_2900 at 3104.030 kb on + strand at 3104.032 kb on - strand, within Dsui_2900 at 3104.104 kb on - strand, within Dsui_2900 at 3104.105 kb on - strand at 3104.115 kb on - strand, within Dsui_2900 at 3104.116 kb on + strand at 3104.212 kb on + strand at 3104.268 kb on + strand, within Dsui_2900 at 3104.302 kb on + strand at 3104.425 kb on + strand at 3104.433 kb on - strand at 3104.440 kb on - strand at 3104.473 kb on + strand at 3104.585 kb on + strand at 3105.511 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours remove 3,102,045 - -1.8 3,102,224 + +0.7 3,102,236 + -0.9 3,102,270 + Dsui_2899 0.13 +0.5 3,102,333 - -1.6 3,102,344 - +1.3 3,102,433 + Dsui_2899 0.32 +1.6 3,102,479 + Dsui_2899 0.37 +0.7 3,102,581 + Dsui_2899 0.48 -0.3 3,102,618 + Dsui_2899 0.53 +0.3 3,102,618 + Dsui_2899 0.53 +0.5 3,102,620 - -0.8 3,102,623 + Dsui_2899 0.53 +1.2 3,102,643 + Dsui_2899 0.55 +0.5 3,102,724 - -0.6 3,102,787 + Dsui_2899 0.72 +1.3 3,102,795 - +0.1 3,102,797 - Dsui_2899 0.73 -0.6 3,102,800 - +1.2 3,103,050 + +1.2 3,103,203 + Dsui_2900 0.12 -0.3 3,103,211 - Dsui_2900 0.12 -0.9 3,103,312 + Dsui_2900 0.19 +1.8 3,103,320 - Dsui_2900 0.19 +0.6 3,103,520 + Dsui_2900 0.33 -0.4 3,103,961 - Dsui_2900 0.63 -0.1 3,103,992 - Dsui_2900 0.65 +0.0 3,104,030 + +1.5 3,104,032 - Dsui_2900 0.67 +0.2 3,104,104 - Dsui_2900 0.72 +0.6 3,104,105 - -2.7 3,104,115 - Dsui_2900 0.73 +0.6 3,104,116 + -3.3 3,104,212 + +1.5 3,104,268 + Dsui_2900 0.83 -1.6 3,104,302 + -1.0 3,104,425 + -2.3 3,104,433 - +0.4 3,104,440 - -0.5 3,104,473 + -1.5 3,104,585 + +1.5 3,105,511 - +0.7
Or see this region's nucleotide sequence