Strain Fitness in Dechlorosoma suillum PS around Dsui_2857

Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2856 and Dsui_2857 are separated by 101 nucleotidesDsui_2857 and Dsui_2858 overlap by 8 nucleotides Dsui_2856: Dsui_2856 - methyl-accepting chemotaxis protein, at 3,044,547 to 3,046,568 _2856 Dsui_2857: Dsui_2857 - lipoprotein releasing system, ATP-binding protein, at 3,046,670 to 3,047,419 _2857 Dsui_2858: Dsui_2858 - lipoprotein releasing system, transmembrane protein, LolC/E family, at 3,047,412 to 3,048,659 _2858 Position (kb) 3046 3047 3048Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3045.706 kb on + strand, within Dsui_2856at 3045.714 kb on - strand, within Dsui_2856at 3045.714 kb on - strand, within Dsui_2856at 3045.714 kb on - strand, within Dsui_2856at 3045.783 kb on - strand, within Dsui_2856at 3045.829 kb on - strand, within Dsui_2856at 3046.044 kb on + strandat 3046.081 kb on - strand, within Dsui_2856at 3046.091 kb on + strand, within Dsui_2856at 3046.111 kb on - strand, within Dsui_2856at 3046.117 kb on - strand, within Dsui_2856at 3046.136 kb on - strand, within Dsui_2856at 3046.302 kb on - strand, within Dsui_2856at 3046.355 kb on + strandat 3046.363 kb on - strand, within Dsui_2856at 3046.461 kb on + strandat 3046.518 kb on + strandat 3046.530 kb on + strandat 3046.538 kb on - strandat 3046.538 kb on - strandat 3046.585 kb on - strandat 3046.590 kb on - strandat 3046.590 kb on - strandat 3047.417 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
remove
3,045,706 + Dsui_2856 0.57 -1.0
3,045,714 - Dsui_2856 0.58 +1.2
3,045,714 - Dsui_2856 0.58 +1.1
3,045,714 - Dsui_2856 0.58 +0.3
3,045,783 - Dsui_2856 0.61 +0.7
3,045,829 - Dsui_2856 0.63 +0.6
3,046,044 + -2.1
3,046,081 - Dsui_2856 0.76 +1.8
3,046,091 + Dsui_2856 0.76 -0.5
3,046,111 - Dsui_2856 0.77 +1.3
3,046,117 - Dsui_2856 0.78 +0.4
3,046,136 - Dsui_2856 0.79 +1.3
3,046,302 - Dsui_2856 0.87 -0.7
3,046,355 + -1.9
3,046,363 - Dsui_2856 0.90 +0.9
3,046,461 + -3.6
3,046,518 + -2.9
3,046,530 + -2.6
3,046,538 - -0.1
3,046,538 - +0.6
3,046,585 - +0.2
3,046,590 - -0.7
3,046,590 - +1.0
3,047,417 - +0.1

Or see this region's nucleotide sequence