Strain Fitness in Dechlorosoma suillum PS around Dsui_2801

Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2800 and Dsui_2801 are separated by 1 nucleotidesDsui_2801 and Dsui_2802 are separated by 132 nucleotides Dsui_2800: Dsui_2800 - ABC-type dipeptide/oligopeptide/nickel transport system, permease component, at 2,970,502 to 2,971,950 _2800 Dsui_2801: Dsui_2801 - ABC-type dipeptide/oligopeptide/nickel transport system, permease component, at 2,971,952 to 2,972,929 _2801 Dsui_2802: Dsui_2802 - flavoprotein, HI0933 family/uncharacterized flavoprotein, PP_4765 family, at 2,973,062 to 2,974,330 _2802 Position (kb) 2971 2972 2973Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 2971.005 kb on + strand, within Dsui_2800at 2971.037 kb on + strandat 2971.054 kb on - strand, within Dsui_2800at 2971.062 kb on + strand, within Dsui_2800at 2971.138 kb on + strandat 2971.138 kb on - strand, within Dsui_2800at 2971.166 kb on - strand, within Dsui_2800at 2971.198 kb on + strand, within Dsui_2800at 2971.227 kb on - strand, within Dsui_2800at 2971.232 kb on - strand, within Dsui_2800at 2971.232 kb on - strand, within Dsui_2800at 2971.232 kb on - strand, within Dsui_2800at 2971.251 kb on + strand, within Dsui_2800at 2971.441 kb on + strand, within Dsui_2800at 2971.692 kb on - strand, within Dsui_2800at 2971.830 kb on - strandat 2971.917 kb on + strandat 2971.917 kb on + strandat 2972.010 kb on - strandat 2972.011 kb on - strandat 2972.043 kb on + strandat 2972.063 kb on + strandat 2972.070 kb on + strand, within Dsui_2801at 2972.070 kb on + strand, within Dsui_2801at 2972.071 kb on - strand, within Dsui_2801at 2972.080 kb on + strandat 2972.080 kb on + strandat 2972.088 kb on - strand, within Dsui_2801at 2972.104 kb on - strand, within Dsui_2801at 2972.182 kb on - strand, within Dsui_2801at 2972.206 kb on - strand, within Dsui_2801at 2972.246 kb on - strand, within Dsui_2801at 2972.246 kb on - strand, within Dsui_2801at 2972.246 kb on - strand, within Dsui_2801at 2972.305 kb on - strand, within Dsui_2801at 2972.442 kb on + strand, within Dsui_2801at 2972.563 kb on + strand, within Dsui_2801at 2972.571 kb on - strand, within Dsui_2801at 2972.571 kb on - strand, within Dsui_2801at 2972.672 kb on + strandat 2972.844 kb on + strandat 2972.862 kb on - strandat 2972.903 kb on - strandat 2972.918 kb on - strandat 2973.083 kb on + strandat 2973.160 kb on + strandat 2973.274 kb on - strandat 2973.387 kb on + strand, within Dsui_2802at 2973.622 kb on - strandat 2973.859 kb on + strand, within Dsui_2802at 2973.862 kb on + strand, within Dsui_2802at 2973.873 kb on + strand, within Dsui_2802

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Per-strain Table

Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
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2,971,005 + Dsui_2800 0.35 -2.8
2,971,037 + -3.2
2,971,054 - Dsui_2800 0.38 -1.1
2,971,062 + Dsui_2800 0.39 -2.5
2,971,138 + -2.0
2,971,138 - Dsui_2800 0.44 -1.0
2,971,166 - Dsui_2800 0.46 -4.2
2,971,198 + Dsui_2800 0.48 -4.4
2,971,227 - Dsui_2800 0.50 -1.5
2,971,232 - Dsui_2800 0.50 -2.5
2,971,232 - Dsui_2800 0.50 +0.3
2,971,232 - Dsui_2800 0.50 +0.1
2,971,251 + Dsui_2800 0.52 -2.4
2,971,441 + Dsui_2800 0.65 -2.1
2,971,692 - Dsui_2800 0.82 -2.2
2,971,830 - -1.4
2,971,917 + -0.9
2,971,917 + -1.1
2,972,010 - -4.1
2,972,011 - -0.8
2,972,043 + -2.0
2,972,063 + -1.8
2,972,070 + Dsui_2801 0.12 -3.7
2,972,070 + Dsui_2801 0.12 -2.7
2,972,071 - Dsui_2801 0.12 +4.9
2,972,080 + -3.3
2,972,080 + -2.9
2,972,088 - Dsui_2801 0.14 -1.5
2,972,104 - Dsui_2801 0.16 -1.1
2,972,182 - Dsui_2801 0.24 -1.7
2,972,206 - Dsui_2801 0.26 -0.8
2,972,246 - Dsui_2801 0.30 -2.1
2,972,246 - Dsui_2801 0.30 -1.5
2,972,246 - Dsui_2801 0.30 -1.2
2,972,305 - Dsui_2801 0.36 -2.3
2,972,442 + Dsui_2801 0.50 -4.0
2,972,563 + Dsui_2801 0.62 -3.0
2,972,571 - Dsui_2801 0.63 -2.7
2,972,571 - Dsui_2801 0.63 -0.8
2,972,672 + -2.0
2,972,844 + -0.8
2,972,862 - -0.5
2,972,903 - -4.3
2,972,918 - -0.7
2,973,083 + +1.0
2,973,160 + +0.7
2,973,274 - -1.5
2,973,387 + Dsui_2802 0.26 +0.4
2,973,622 - -2.5
2,973,859 + Dsui_2802 0.63 -0.1
2,973,862 + Dsui_2802 0.63 +0.9
2,973,873 + Dsui_2802 0.64 -0.2

Or see this region's nucleotide sequence