Strain Fitness in Dechlorosoma suillum PS around Dsui_2800

Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2799 and Dsui_2800 overlap by 1 nucleotidesDsui_2800 and Dsui_2801 are separated by 1 nucleotides Dsui_2799: Dsui_2799 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, at 2,968,490 to 2,970,502 _2799 Dsui_2800: Dsui_2800 - ABC-type dipeptide/oligopeptide/nickel transport system, permease component, at 2,970,502 to 2,971,950 _2800 Dsui_2801: Dsui_2801 - ABC-type dipeptide/oligopeptide/nickel transport system, permease component, at 2,971,952 to 2,972,929 _2801 Position (kb) 2970 2971 2972Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5at 2969.555 kb on - strand, within Dsui_2799at 2969.563 kb on + strandat 2969.694 kb on + strandat 2969.868 kb on - strand, within Dsui_2799at 2970.108 kb on - strand, within Dsui_2799at 2970.263 kb on + strandat 2970.351 kb on - strandat 2970.396 kb on - strandat 2970.403 kb on - strandat 2970.436 kb on - strandat 2970.616 kb on - strandat 2970.630 kb on - strandat 2970.634 kb on - strandat 2970.635 kb on - strandat 2970.654 kb on + strand, within Dsui_2800at 2970.662 kb on - strandat 2970.662 kb on - strand, within Dsui_2800at 2970.678 kb on - strand, within Dsui_2800at 2970.715 kb on - strand, within Dsui_2800at 2970.721 kb on - strand, within Dsui_2800at 2970.721 kb on - strand, within Dsui_2800at 2970.721 kb on - strand, within Dsui_2800at 2970.728 kb on - strandat 2970.767 kb on + strandat 2970.842 kb on + strand, within Dsui_2800at 2970.861 kb on - strand, within Dsui_2800at 2971.005 kb on + strand, within Dsui_2800at 2971.037 kb on + strandat 2971.054 kb on - strand, within Dsui_2800at 2971.062 kb on + strand, within Dsui_2800at 2971.138 kb on + strandat 2971.138 kb on - strand, within Dsui_2800at 2971.166 kb on - strand, within Dsui_2800at 2971.198 kb on + strand, within Dsui_2800at 2971.227 kb on - strand, within Dsui_2800at 2971.232 kb on - strand, within Dsui_2800at 2971.232 kb on - strand, within Dsui_2800at 2971.232 kb on - strand, within Dsui_2800at 2971.251 kb on + strand, within Dsui_2800at 2971.441 kb on + strand, within Dsui_2800at 2971.692 kb on - strand, within Dsui_2800at 2971.830 kb on - strandat 2971.917 kb on + strandat 2971.917 kb on + strandat 2972.010 kb on - strandat 2972.011 kb on - strandat 2972.043 kb on + strandat 2972.063 kb on + strandat 2972.070 kb on + strand, within Dsui_2801at 2972.070 kb on + strand, within Dsui_2801at 2972.071 kb on - strand, within Dsui_2801at 2972.080 kb on + strandat 2972.080 kb on + strandat 2972.088 kb on - strand, within Dsui_2801at 2972.104 kb on - strand, within Dsui_2801at 2972.182 kb on - strand, within Dsui_2801at 2972.206 kb on - strand, within Dsui_2801at 2972.246 kb on - strand, within Dsui_2801at 2972.246 kb on - strand, within Dsui_2801at 2972.246 kb on - strand, within Dsui_2801at 2972.305 kb on - strand, within Dsui_2801at 2972.442 kb on + strand, within Dsui_2801at 2972.563 kb on + strand, within Dsui_2801at 2972.571 kb on - strand, within Dsui_2801at 2972.571 kb on - strand, within Dsui_2801at 2972.672 kb on + strandat 2972.844 kb on + strandat 2972.862 kb on - strandat 2972.903 kb on - strandat 2972.918 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
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2,969,555 - Dsui_2799 0.53 +0.4
2,969,563 + -0.5
2,969,694 + -2.6
2,969,868 - Dsui_2799 0.68 -4.4
2,970,108 - Dsui_2799 0.80 -3.1
2,970,263 + -3.0
2,970,351 - -1.6
2,970,396 - -5.0
2,970,403 - -2.6
2,970,436 - +0.3
2,970,616 - -2.2
2,970,630 - -3.3
2,970,634 - -0.8
2,970,635 - -3.6
2,970,654 + Dsui_2800 0.10 -2.5
2,970,662 - -3.2
2,970,662 - Dsui_2800 0.11 -0.7
2,970,678 - Dsui_2800 0.12 -2.4
2,970,715 - Dsui_2800 0.15 -1.5
2,970,721 - Dsui_2800 0.15 -1.2
2,970,721 - Dsui_2800 0.15 -3.4
2,970,721 - Dsui_2800 0.15 -1.8
2,970,728 - -2.3
2,970,767 + -0.3
2,970,842 + Dsui_2800 0.23 -1.7
2,970,861 - Dsui_2800 0.25 -1.4
2,971,005 + Dsui_2800 0.35 -2.8
2,971,037 + -3.2
2,971,054 - Dsui_2800 0.38 -1.1
2,971,062 + Dsui_2800 0.39 -2.5
2,971,138 + -2.0
2,971,138 - Dsui_2800 0.44 -1.0
2,971,166 - Dsui_2800 0.46 -4.2
2,971,198 + Dsui_2800 0.48 -4.4
2,971,227 - Dsui_2800 0.50 -1.5
2,971,232 - Dsui_2800 0.50 -2.5
2,971,232 - Dsui_2800 0.50 +0.3
2,971,232 - Dsui_2800 0.50 +0.1
2,971,251 + Dsui_2800 0.52 -2.4
2,971,441 + Dsui_2800 0.65 -2.1
2,971,692 - Dsui_2800 0.82 -2.2
2,971,830 - -1.4
2,971,917 + -0.9
2,971,917 + -1.1
2,972,010 - -4.1
2,972,011 - -0.8
2,972,043 + -2.0
2,972,063 + -1.8
2,972,070 + Dsui_2801 0.12 -3.7
2,972,070 + Dsui_2801 0.12 -2.7
2,972,071 - Dsui_2801 0.12 +4.9
2,972,080 + -3.3
2,972,080 + -2.9
2,972,088 - Dsui_2801 0.14 -1.5
2,972,104 - Dsui_2801 0.16 -1.1
2,972,182 - Dsui_2801 0.24 -1.7
2,972,206 - Dsui_2801 0.26 -0.8
2,972,246 - Dsui_2801 0.30 -2.1
2,972,246 - Dsui_2801 0.30 -1.5
2,972,246 - Dsui_2801 0.30 -1.2
2,972,305 - Dsui_2801 0.36 -2.3
2,972,442 + Dsui_2801 0.50 -4.0
2,972,563 + Dsui_2801 0.62 -3.0
2,972,571 - Dsui_2801 0.63 -2.7
2,972,571 - Dsui_2801 0.63 -0.8
2,972,672 + -2.0
2,972,844 + -0.8
2,972,862 - -0.5
2,972,903 - -4.3
2,972,918 - -0.7

Or see this region's nucleotide sequence