Strain Fitness in Dechlorosoma suillum PS around Dsui_2677

Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2675 and Dsui_2676 overlap by 1 nucleotidesDsui_2676 and Dsui_2677 are separated by 199 nucleotidesDsui_2677 and Dsui_2678 are separated by 85 nucleotides Dsui_2675: Dsui_2675 - SsrA-binding protein, at 2,826,955 to 2,827,401 _2675 Dsui_2676: Dsui_2676 - putative membrane protein, at 2,827,401 to 2,828,021 _2676 Dsui_2677: Dsui_2677 - phosphoenolpyruvate synthase, at 2,828,221 to 2,830,596 _2677 Dsui_2678: Dsui_2678 - hypothetical protein, at 2,830,682 to 2,831,524 _2678 Position (kb) 2828 2829 2830 2831Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2827.403 kb on - strandat 2827.426 kb on - strandat 2827.429 kb on - strandat 2827.439 kb on - strandat 2827.530 kb on + strand, within Dsui_2676at 2827.598 kb on - strand, within Dsui_2676at 2827.612 kb on - strand, within Dsui_2676at 2827.995 kb on - strandat 2828.010 kb on + strandat 2828.018 kb on - strandat 2828.076 kb on + strandat 2828.125 kb on + strandat 2828.133 kb on - strandat 2828.191 kb on + strandat 2830.644 kb on - strandat 2830.649 kb on + strandat 2830.649 kb on + strandat 2830.657 kb on - strandat 2830.657 kb on - strandat 2830.686 kb on + strandat 2830.766 kb on - strandat 2830.772 kb on - strand, within Dsui_2678at 2830.776 kb on - strandat 2830.783 kb on + strand, within Dsui_2678at 2830.783 kb on + strand, within Dsui_2678at 2830.787 kb on - strand, within Dsui_2678at 2830.791 kb on - strandat 2830.798 kb on + strand, within Dsui_2678at 2830.804 kb on - strandat 2830.843 kb on - strand, within Dsui_2678at 2830.847 kb on - strand, within Dsui_2678at 2830.887 kb on + strand, within Dsui_2678at 2830.920 kb on + strand, within Dsui_2678at 2830.948 kb on + strand, within Dsui_2678at 2830.980 kb on + strand, within Dsui_2678at 2830.988 kb on - strand, within Dsui_2678at 2831.028 kb on + strand, within Dsui_2678at 2831.277 kb on + strand, within Dsui_2678at 2831.406 kb on - strandat 2831.442 kb on + strandat 2831.442 kb on + strandat 2831.450 kb on - strandat 2831.540 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
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2,827,403 - +0.2
2,827,426 - +1.8
2,827,429 - +1.0
2,827,439 - +0.6
2,827,530 + Dsui_2676 0.21 +2.0
2,827,598 - Dsui_2676 0.32 +2.0
2,827,612 - Dsui_2676 0.34 +0.3
2,827,995 - +0.2
2,828,010 + +0.6
2,828,018 - +0.7
2,828,076 + +0.7
2,828,125 + +0.5
2,828,133 - +1.5
2,828,191 + -0.1
2,830,644 - -1.8
2,830,649 + -2.2
2,830,649 + -0.8
2,830,657 - +1.2
2,830,657 - +0.2
2,830,686 + +0.4
2,830,766 - -3.7
2,830,772 - Dsui_2678 0.11 -3.3
2,830,776 - -0.2
2,830,783 + Dsui_2678 0.12 +1.6
2,830,783 + Dsui_2678 0.12 +1.5
2,830,787 - Dsui_2678 0.12 -1.0
2,830,791 - -3.3
2,830,798 + Dsui_2678 0.14 +2.2
2,830,804 - +0.2
2,830,843 - Dsui_2678 0.19 -0.1
2,830,847 - Dsui_2678 0.20 -1.7
2,830,887 + Dsui_2678 0.24 -3.5
2,830,920 + Dsui_2678 0.28 -1.8
2,830,948 + Dsui_2678 0.32 +0.2
2,830,980 + Dsui_2678 0.35 -0.5
2,830,988 - Dsui_2678 0.36 -0.6
2,831,028 + Dsui_2678 0.41 +0.3
2,831,277 + Dsui_2678 0.71 +0.0
2,831,406 - -1.9
2,831,442 + -1.0
2,831,442 + -0.8
2,831,450 - -2.7
2,831,540 + +1.1

Or see this region's nucleotide sequence