Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2423 and Dsui_2424 are separated by 5 nucleotides Dsui_2424 and Dsui_2425 are separated by 39 nucleotides Dsui_2425 and Dsui_2426 are separated by 184 nucleotides Dsui_2426 and Dsui_2427 are separated by 15 nucleotides
Dsui_2423: Dsui_2423 - GTP-binding protein TypA/BipA, at 2,581,928 to 2,583,742
_2423
Dsui_2424: Dsui_2424 - hypothetical protein, at 2,583,748 to 2,583,906
_2424
Dsui_2425: Dsui_2425 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,583,946 to 2,585,865
_2425
Dsui_2426: Dsui_2426 - hypothetical protein, at 2,586,050 to 2,586,832
_2426
Dsui_2427: Dsui_2427 - molybdenum cofactor biosynthesis protein A, at 2,586,848 to 2,587,921
_2427
Position (kb)
2583
2584
2585
2586 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2583.857 kb on - strand, within Dsui_2424 at 2583.984 kb on + strand at 2584.070 kb on + strand at 2584.091 kb on - strand at 2584.170 kb on - strand, within Dsui_2425 at 2584.230 kb on - strand, within Dsui_2425 at 2584.332 kb on + strand, within Dsui_2425 at 2584.353 kb on - strand, within Dsui_2425 at 2584.516 kb on + strand, within Dsui_2425 at 2584.532 kb on - strand, within Dsui_2425 at 2584.661 kb on - strand, within Dsui_2425 at 2584.760 kb on + strand at 2584.766 kb on - strand, within Dsui_2425 at 2584.768 kb on - strand, within Dsui_2425 at 2585.058 kb on + strand at 2585.096 kb on - strand, within Dsui_2425 at 2585.176 kb on + strand at 2585.184 kb on - strand, within Dsui_2425 at 2585.221 kb on - strand, within Dsui_2425 at 2585.226 kb on - strand, within Dsui_2425 at 2585.274 kb on - strand, within Dsui_2425 at 2585.378 kb on + strand, within Dsui_2425 at 2585.423 kb on + strand, within Dsui_2425 at 2585.423 kb on + strand, within Dsui_2425 at 2585.423 kb on + strand at 2585.431 kb on - strand, within Dsui_2425 at 2585.431 kb on - strand, within Dsui_2425 at 2585.476 kb on + strand, within Dsui_2425 at 2585.476 kb on + strand, within Dsui_2425 at 2585.532 kb on - strand, within Dsui_2425 at 2585.574 kb on - strand, within Dsui_2425 at 2585.582 kb on - strand, within Dsui_2425 at 2585.638 kb on + strand at 2585.696 kb on - strand at 2585.718 kb on + strand at 2585.721 kb on - strand at 2585.747 kb on - strand at 2585.817 kb on - strand at 2585.877 kb on + strand at 2585.877 kb on + strand at 2585.885 kb on - strand at 2585.885 kb on - strand at 2585.897 kb on - strand at 2585.968 kb on - strand at 2585.983 kb on + strand at 2586.032 kb on + strand at 2586.098 kb on - strand at 2586.127 kb on + strand at 2586.231 kb on + strand, within Dsui_2426 at 2586.277 kb on + strand, within Dsui_2426 at 2586.279 kb on - strand, within Dsui_2426 at 2586.280 kb on - strand, within Dsui_2426 at 2586.301 kb on - strand, within Dsui_2426 at 2586.321 kb on + strand, within Dsui_2426 at 2586.329 kb on - strand, within Dsui_2426 at 2586.361 kb on + strand, within Dsui_2426 at 2586.369 kb on + strand at 2586.369 kb on + strand at 2586.377 kb on - strand, within Dsui_2426 at 2586.396 kb on + strand, within Dsui_2426 at 2586.510 kb on - strand, within Dsui_2426 at 2586.544 kb on - strand at 2586.602 kb on - strand, within Dsui_2426 at 2586.629 kb on + strand at 2586.629 kb on + strand, within Dsui_2426
Per-strain Table
Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours remove 2,583,857 - Dsui_2424 0.69 +0.6 2,583,984 + -0.9 2,584,070 + +0.4 2,584,091 - +0.9 2,584,170 - Dsui_2425 0.12 -0.1 2,584,230 - Dsui_2425 0.15 +1.0 2,584,332 + Dsui_2425 0.20 +1.2 2,584,353 - Dsui_2425 0.21 +1.4 2,584,516 + Dsui_2425 0.30 +0.1 2,584,532 - Dsui_2425 0.31 +1.0 2,584,661 - Dsui_2425 0.37 +1.1 2,584,760 + +2.8 2,584,766 - Dsui_2425 0.43 +0.7 2,584,768 - Dsui_2425 0.43 +1.0 2,585,058 + -3.1 2,585,096 - Dsui_2425 0.60 +0.3 2,585,176 + -1.5 2,585,184 - Dsui_2425 0.64 -0.1 2,585,221 - Dsui_2425 0.66 +1.1 2,585,226 - Dsui_2425 0.67 +1.4 2,585,274 - Dsui_2425 0.69 -1.0 2,585,378 + Dsui_2425 0.75 -0.4 2,585,423 + Dsui_2425 0.77 -2.4 2,585,423 + Dsui_2425 0.77 -4.0 2,585,423 + +0.0 2,585,431 - Dsui_2425 0.77 -1.8 2,585,431 - Dsui_2425 0.77 +1.3 2,585,476 + Dsui_2425 0.80 -3.6 2,585,476 + Dsui_2425 0.80 -0.2 2,585,532 - Dsui_2425 0.83 +0.9 2,585,574 - Dsui_2425 0.85 +1.1 2,585,582 - Dsui_2425 0.85 +0.6 2,585,638 + -1.8 2,585,696 - +0.6 2,585,718 + -1.7 2,585,721 - +0.8 2,585,747 - +1.0 2,585,817 - +1.2 2,585,877 + -1.0 2,585,877 + -0.5 2,585,885 - +2.4 2,585,885 - +0.6 2,585,897 - +0.8 2,585,968 - +1.3 2,585,983 + -0.6 2,586,032 + +0.1 2,586,098 - -1.8 2,586,127 + +0.4 2,586,231 + Dsui_2426 0.23 +1.0 2,586,277 + Dsui_2426 0.29 +0.6 2,586,279 - Dsui_2426 0.29 +0.6 2,586,280 - Dsui_2426 0.29 +1.1 2,586,301 - Dsui_2426 0.32 -2.3 2,586,321 + Dsui_2426 0.35 -0.0 2,586,329 - Dsui_2426 0.36 -4.1 2,586,361 + Dsui_2426 0.40 -1.0 2,586,369 + -0.6 2,586,369 + -2.9 2,586,377 - Dsui_2426 0.42 -0.7 2,586,396 + Dsui_2426 0.44 +0.9 2,586,510 - Dsui_2426 0.59 -0.8 2,586,544 - -2.5 2,586,602 - Dsui_2426 0.70 +2.0 2,586,629 + +0.6 2,586,629 + Dsui_2426 0.74 +0.8
Or see this region's nucleotide sequence