Strain Fitness in Dechlorosoma suillum PS around Dsui_1414

Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1412 and Dsui_1413 overlap by 4 nucleotidesDsui_1413 and Dsui_1414 are separated by 153 nucleotidesDsui_1414 and Dsui_1415 are separated by 14 nucleotidesDsui_1415 and Dsui_1416 overlap by 1 nucleotides Dsui_1412: Dsui_1412 - chromate transport protein ChrA, at 1,469,388 to 1,469,987 _1412 Dsui_1413: Dsui_1413 - chromate transport protein ChrA, at 1,469,984 to 1,470,505 _1413 Dsui_1414: Dsui_1414 - histidinol-phosphate aminotransferase, at 1,470,659 to 1,471,846 _1414 Dsui_1415: Dsui_1415 - imidazoleglycerol-phosphate dehydratase, at 1,471,861 to 1,472,448 _1415 Dsui_1416: Dsui_1416 - imidazole glycerol phosphate synthase, glutamine amidotransferase subunit, at 1,472,448 to 1,473,086 _1416 Position (kb) 1470 1471 1472Strain fitness (log2 ratio) -2 -1 0 1 2at 1469.669 kb on + strand, within Dsui_1412at 1469.834 kb on - strand, within Dsui_1412at 1469.874 kb on - strand, within Dsui_1412at 1469.902 kb on + strand, within Dsui_1412at 1470.047 kb on + strand, within Dsui_1413at 1470.075 kb on + strand, within Dsui_1413at 1470.167 kb on + strand, within Dsui_1413at 1470.183 kb on + strand, within Dsui_1413at 1470.499 kb on + strandat 1470.507 kb on - strandat 1470.608 kb on - strandat 1470.631 kb on + strandat 1471.808 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
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1,469,669 + Dsui_1412 0.47 -0.8
1,469,834 - Dsui_1412 0.74 -0.7
1,469,874 - Dsui_1412 0.81 -0.9
1,469,902 + Dsui_1412 0.86 +1.9
1,470,047 + Dsui_1413 0.12 -0.1
1,470,075 + Dsui_1413 0.17 -0.4
1,470,167 + Dsui_1413 0.35 -0.0
1,470,183 + Dsui_1413 0.38 -2.0
1,470,499 + -1.0
1,470,507 - +0.6
1,470,608 - +0.2
1,470,631 + +0.5
1,471,808 - +1.3

Or see this region's nucleotide sequence