Strain Fitness in Dechlorosoma suillum PS around Dsui_1372

Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1371 and Dsui_1372 are separated by 9 nucleotidesDsui_1372 and Dsui_1373 are separated by 142 nucleotides Dsui_1371: Dsui_1371 - transcriptional regulator, at 1,424,355 to 1,425,254 _1371 Dsui_1372: Dsui_1372 - methyl-accepting chemotaxis protein, at 1,425,264 to 1,426,883 _1372 Dsui_1373: Dsui_1373 - ATP-dependent helicase HrpA, at 1,427,026 to 1,430,988 _1373 Position (kb) 1425 1426 1427Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1424.286 kb on - strandat 1424.289 kb on + strandat 1424.444 kb on - strandat 1424.457 kb on + strand, within Dsui_1371at 1424.638 kb on + strand, within Dsui_1371at 1424.638 kb on + strand, within Dsui_1371at 1424.646 kb on - strandat 1424.684 kb on - strand, within Dsui_1371at 1424.707 kb on + strand, within Dsui_1371at 1424.730 kb on + strand, within Dsui_1371at 1424.866 kb on - strand, within Dsui_1371at 1424.900 kb on + strand, within Dsui_1371at 1424.921 kb on - strand, within Dsui_1371at 1424.958 kb on + strand, within Dsui_1371at 1424.966 kb on - strand, within Dsui_1371at 1425.040 kb on + strand, within Dsui_1371at 1425.056 kb on - strand, within Dsui_1371at 1425.060 kb on + strand, within Dsui_1371at 1425.138 kb on - strand, within Dsui_1371at 1425.142 kb on - strandat 1425.210 kb on + strandat 1425.210 kb on + strandat 1425.210 kb on + strandat 1425.218 kb on - strandat 1425.304 kb on - strandat 1425.416 kb on - strandat 1425.446 kb on + strand, within Dsui_1372at 1425.484 kb on + strand, within Dsui_1372at 1425.558 kb on - strand, within Dsui_1372at 1425.580 kb on - strand, within Dsui_1372at 1425.584 kb on + strand, within Dsui_1372at 1425.614 kb on - strand, within Dsui_1372at 1425.618 kb on + strand, within Dsui_1372at 1425.742 kb on + strandat 1425.848 kb on - strandat 1425.872 kb on - strand, within Dsui_1372at 1425.881 kb on - strand, within Dsui_1372at 1425.995 kb on - strand, within Dsui_1372at 1426.055 kb on + strand, within Dsui_1372at 1426.325 kb on + strand, within Dsui_1372at 1426.369 kb on + strand, within Dsui_1372at 1426.377 kb on - strand, within Dsui_1372at 1426.386 kb on - strand, within Dsui_1372at 1426.401 kb on - strand, within Dsui_1372at 1426.474 kb on - strand, within Dsui_1372at 1426.479 kb on - strand, within Dsui_1372at 1426.481 kb on + strand, within Dsui_1372at 1426.486 kb on + strand, within Dsui_1372at 1426.566 kb on + strand, within Dsui_1372at 1426.588 kb on - strand, within Dsui_1372at 1426.644 kb on - strand, within Dsui_1372at 1426.668 kb on - strand, within Dsui_1372at 1426.735 kb on - strandat 1426.745 kb on + strandat 1426.789 kb on - strandat 1426.811 kb on - strandat 1426.814 kb on + strandat 1426.814 kb on + strandat 1426.891 kb on + strandat 1426.959 kb on - strandat 1426.988 kb on + strandat 1426.998 kb on + strandat 1427.013 kb on + strandat 1427.014 kb on + strandat 1427.021 kb on - strandat 1427.113 kb on + strandat 1427.146 kb on - strandat 1427.225 kb on + strandat 1427.228 kb on + strandat 1427.332 kb on - strandat 1427.405 kb on - strandat 1427.423 kb on + strand, within Dsui_1373at 1427.537 kb on - strand, within Dsui_1373at 1427.655 kb on + strand, within Dsui_1373at 1427.689 kb on - strand, within Dsui_1373at 1427.712 kb on + strand, within Dsui_1373at 1427.758 kb on + strand, within Dsui_1373at 1427.822 kb on - strand, within Dsui_1373at 1427.827 kb on - strand, within Dsui_1373

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Per-strain Table

Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
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1,424,286 - -1.1
1,424,289 + -0.3
1,424,444 - -1.2
1,424,457 + Dsui_1371 0.11 +1.0
1,424,638 + Dsui_1371 0.31 -0.0
1,424,638 + Dsui_1371 0.31 +3.4
1,424,646 - +0.2
1,424,684 - Dsui_1371 0.37 -0.4
1,424,707 + Dsui_1371 0.39 -0.4
1,424,730 + Dsui_1371 0.42 +0.7
1,424,866 - Dsui_1371 0.57 +0.7
1,424,900 + Dsui_1371 0.61 +0.3
1,424,921 - Dsui_1371 0.63 +1.2
1,424,958 + Dsui_1371 0.67 +1.2
1,424,966 - Dsui_1371 0.68 +1.1
1,425,040 + Dsui_1371 0.76 -0.0
1,425,056 - Dsui_1371 0.78 -0.1
1,425,060 + Dsui_1371 0.78 +0.4
1,425,138 - Dsui_1371 0.87 +0.5
1,425,142 - -0.5
1,425,210 + +0.7
1,425,210 + +3.1
1,425,210 + +0.9
1,425,218 - +0.6
1,425,304 - +1.4
1,425,416 - -0.1
1,425,446 + Dsui_1372 0.11 +0.3
1,425,484 + Dsui_1372 0.14 -0.9
1,425,558 - Dsui_1372 0.18 +1.0
1,425,580 - Dsui_1372 0.20 +1.1
1,425,584 + Dsui_1372 0.20 +1.3
1,425,614 - Dsui_1372 0.22 +0.6
1,425,618 + Dsui_1372 0.22 +2.5
1,425,742 + -3.4
1,425,848 - -1.5
1,425,872 - Dsui_1372 0.38 +0.4
1,425,881 - Dsui_1372 0.38 +1.0
1,425,995 - Dsui_1372 0.45 -3.1
1,426,055 + Dsui_1372 0.49 +0.8
1,426,325 + Dsui_1372 0.65 -4.2
1,426,369 + Dsui_1372 0.68 +0.8
1,426,377 - Dsui_1372 0.69 +1.2
1,426,386 - Dsui_1372 0.69 +0.9
1,426,401 - Dsui_1372 0.70 -0.4
1,426,474 - Dsui_1372 0.75 +0.6
1,426,479 - Dsui_1372 0.75 +2.1
1,426,481 + Dsui_1372 0.75 +1.1
1,426,486 + Dsui_1372 0.75 +1.0
1,426,566 + Dsui_1372 0.80 +1.5
1,426,588 - Dsui_1372 0.82 +1.4
1,426,644 - Dsui_1372 0.85 +1.5
1,426,668 - Dsui_1372 0.87 +1.6
1,426,735 - -1.6
1,426,745 + -1.5
1,426,789 - +0.5
1,426,811 - -0.2
1,426,814 + +2.4
1,426,814 + -0.1
1,426,891 + -1.2
1,426,959 - +1.5
1,426,988 + -1.1
1,426,998 + -1.5
1,427,013 + -1.3
1,427,014 + -0.6
1,427,021 - -0.5
1,427,113 + +1.5
1,427,146 - -1.0
1,427,225 + +0.8
1,427,228 + +1.3
1,427,332 - +1.4
1,427,405 - +2.7
1,427,423 + Dsui_1373 0.10 +1.5
1,427,537 - Dsui_1373 0.13 +0.2
1,427,655 + Dsui_1373 0.16 +0.7
1,427,689 - Dsui_1373 0.17 +0.3
1,427,712 + Dsui_1373 0.17 +0.1
1,427,758 + Dsui_1373 0.18 +0.6
1,427,822 - Dsui_1373 0.20 -0.6
1,427,827 - Dsui_1373 0.20 +0.2

Or see this region's nucleotide sequence