Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1371 and Dsui_1372 are separated by 9 nucleotides Dsui_1372 and Dsui_1373 are separated by 142 nucleotides
Dsui_1371: Dsui_1371 - transcriptional regulator, at 1,424,355 to 1,425,254
_1371
Dsui_1372: Dsui_1372 - methyl-accepting chemotaxis protein, at 1,425,264 to 1,426,883
_1372
Dsui_1373: Dsui_1373 - ATP-dependent helicase HrpA, at 1,427,026 to 1,430,988
_1373
Position (kb)
1425
1426
1427 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1424.286 kb on - strand at 1424.289 kb on + strand at 1424.444 kb on - strand at 1424.457 kb on + strand, within Dsui_1371 at 1424.638 kb on + strand, within Dsui_1371 at 1424.638 kb on + strand, within Dsui_1371 at 1424.646 kb on - strand at 1424.684 kb on - strand, within Dsui_1371 at 1424.707 kb on + strand, within Dsui_1371 at 1424.730 kb on + strand, within Dsui_1371 at 1424.866 kb on - strand, within Dsui_1371 at 1424.900 kb on + strand, within Dsui_1371 at 1424.921 kb on - strand, within Dsui_1371 at 1424.958 kb on + strand, within Dsui_1371 at 1424.966 kb on - strand, within Dsui_1371 at 1425.040 kb on + strand, within Dsui_1371 at 1425.056 kb on - strand, within Dsui_1371 at 1425.060 kb on + strand, within Dsui_1371 at 1425.138 kb on - strand, within Dsui_1371 at 1425.142 kb on - strand at 1425.210 kb on + strand at 1425.210 kb on + strand at 1425.210 kb on + strand at 1425.218 kb on - strand at 1425.304 kb on - strand at 1425.416 kb on - strand at 1425.446 kb on + strand, within Dsui_1372 at 1425.484 kb on + strand, within Dsui_1372 at 1425.558 kb on - strand, within Dsui_1372 at 1425.580 kb on - strand, within Dsui_1372 at 1425.584 kb on + strand, within Dsui_1372 at 1425.614 kb on - strand, within Dsui_1372 at 1425.618 kb on + strand, within Dsui_1372 at 1425.742 kb on + strand at 1425.848 kb on - strand at 1425.872 kb on - strand, within Dsui_1372 at 1425.881 kb on - strand, within Dsui_1372 at 1425.995 kb on - strand, within Dsui_1372 at 1426.055 kb on + strand, within Dsui_1372 at 1426.325 kb on + strand, within Dsui_1372 at 1426.369 kb on + strand, within Dsui_1372 at 1426.377 kb on - strand, within Dsui_1372 at 1426.386 kb on - strand, within Dsui_1372 at 1426.401 kb on - strand, within Dsui_1372 at 1426.474 kb on - strand, within Dsui_1372 at 1426.479 kb on - strand, within Dsui_1372 at 1426.481 kb on + strand, within Dsui_1372 at 1426.486 kb on + strand, within Dsui_1372 at 1426.566 kb on + strand, within Dsui_1372 at 1426.588 kb on - strand, within Dsui_1372 at 1426.644 kb on - strand, within Dsui_1372 at 1426.668 kb on - strand, within Dsui_1372 at 1426.735 kb on - strand at 1426.745 kb on + strand at 1426.789 kb on - strand at 1426.811 kb on - strand at 1426.814 kb on + strand at 1426.814 kb on + strand at 1426.891 kb on + strand at 1426.959 kb on - strand at 1426.988 kb on + strand at 1426.998 kb on + strand at 1427.013 kb on + strand at 1427.014 kb on + strand at 1427.021 kb on - strand at 1427.113 kb on + strand at 1427.146 kb on - strand at 1427.225 kb on + strand at 1427.228 kb on + strand at 1427.332 kb on - strand at 1427.405 kb on - strand at 1427.423 kb on + strand, within Dsui_1373 at 1427.537 kb on - strand, within Dsui_1373 at 1427.655 kb on + strand, within Dsui_1373 at 1427.689 kb on - strand, within Dsui_1373 at 1427.712 kb on + strand, within Dsui_1373 at 1427.758 kb on + strand, within Dsui_1373 at 1427.822 kb on - strand, within Dsui_1373 at 1427.827 kb on - strand, within Dsui_1373
Per-strain Table
Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours remove 1,424,286 - -1.1 1,424,289 + -0.3 1,424,444 - -1.2 1,424,457 + Dsui_1371 0.11 +1.0 1,424,638 + Dsui_1371 0.31 -0.0 1,424,638 + Dsui_1371 0.31 +3.4 1,424,646 - +0.2 1,424,684 - Dsui_1371 0.37 -0.4 1,424,707 + Dsui_1371 0.39 -0.4 1,424,730 + Dsui_1371 0.42 +0.7 1,424,866 - Dsui_1371 0.57 +0.7 1,424,900 + Dsui_1371 0.61 +0.3 1,424,921 - Dsui_1371 0.63 +1.2 1,424,958 + Dsui_1371 0.67 +1.2 1,424,966 - Dsui_1371 0.68 +1.1 1,425,040 + Dsui_1371 0.76 -0.0 1,425,056 - Dsui_1371 0.78 -0.1 1,425,060 + Dsui_1371 0.78 +0.4 1,425,138 - Dsui_1371 0.87 +0.5 1,425,142 - -0.5 1,425,210 + +0.7 1,425,210 + +3.1 1,425,210 + +0.9 1,425,218 - +0.6 1,425,304 - +1.4 1,425,416 - -0.1 1,425,446 + Dsui_1372 0.11 +0.3 1,425,484 + Dsui_1372 0.14 -0.9 1,425,558 - Dsui_1372 0.18 +1.0 1,425,580 - Dsui_1372 0.20 +1.1 1,425,584 + Dsui_1372 0.20 +1.3 1,425,614 - Dsui_1372 0.22 +0.6 1,425,618 + Dsui_1372 0.22 +2.5 1,425,742 + -3.4 1,425,848 - -1.5 1,425,872 - Dsui_1372 0.38 +0.4 1,425,881 - Dsui_1372 0.38 +1.0 1,425,995 - Dsui_1372 0.45 -3.1 1,426,055 + Dsui_1372 0.49 +0.8 1,426,325 + Dsui_1372 0.65 -4.2 1,426,369 + Dsui_1372 0.68 +0.8 1,426,377 - Dsui_1372 0.69 +1.2 1,426,386 - Dsui_1372 0.69 +0.9 1,426,401 - Dsui_1372 0.70 -0.4 1,426,474 - Dsui_1372 0.75 +0.6 1,426,479 - Dsui_1372 0.75 +2.1 1,426,481 + Dsui_1372 0.75 +1.1 1,426,486 + Dsui_1372 0.75 +1.0 1,426,566 + Dsui_1372 0.80 +1.5 1,426,588 - Dsui_1372 0.82 +1.4 1,426,644 - Dsui_1372 0.85 +1.5 1,426,668 - Dsui_1372 0.87 +1.6 1,426,735 - -1.6 1,426,745 + -1.5 1,426,789 - +0.5 1,426,811 - -0.2 1,426,814 + +2.4 1,426,814 + -0.1 1,426,891 + -1.2 1,426,959 - +1.5 1,426,988 + -1.1 1,426,998 + -1.5 1,427,013 + -1.3 1,427,014 + -0.6 1,427,021 - -0.5 1,427,113 + +1.5 1,427,146 - -1.0 1,427,225 + +0.8 1,427,228 + +1.3 1,427,332 - +1.4 1,427,405 - +2.7 1,427,423 + Dsui_1373 0.10 +1.5 1,427,537 - Dsui_1373 0.13 +0.2 1,427,655 + Dsui_1373 0.16 +0.7 1,427,689 - Dsui_1373 0.17 +0.3 1,427,712 + Dsui_1373 0.17 +0.1 1,427,758 + Dsui_1373 0.18 +0.6 1,427,822 - Dsui_1373 0.20 -0.6 1,427,827 - Dsui_1373 0.20 +0.2
Or see this region's nucleotide sequence