Strain Fitness in Dechlorosoma suillum PS around Dsui_1256

Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1254 and Dsui_1255 are separated by 53 nucleotidesDsui_1255 and Dsui_1256 are separated by 4 nucleotidesDsui_1256 and Dsui_1257 are separated by 45 nucleotides Dsui_1254: Dsui_1254 - TonB-dependent copper receptor, at 1,315,724 to 1,317,742 _1254 Dsui_1255: Dsui_1255 - mannose-6-phosphate isomerase, at 1,317,796 to 1,318,281 _1255 Dsui_1256: Dsui_1256 - hypothetical protein, at 1,318,286 to 1,318,540 _1256 Dsui_1257: Dsui_1257 - DNA-directed DNA polymerase III PolC, at 1,318,586 to 1,322,041 _1257 Position (kb) 1318 1319Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1317.309 kb on - strand, within Dsui_1254at 1317.328 kb on - strand, within Dsui_1254at 1317.390 kb on + strand, within Dsui_1254at 1317.420 kb on - strand, within Dsui_1254at 1317.427 kb on + strand, within Dsui_1254at 1317.589 kb on - strandat 1317.589 kb on - strandat 1317.594 kb on - strandat 1317.599 kb on - strandat 1317.619 kb on + strandat 1317.627 kb on - strandat 1317.627 kb on - strandat 1317.645 kb on - strandat 1317.648 kb on + strandat 1317.763 kb on - strandat 1317.773 kb on - strandat 1317.823 kb on + strandat 1317.856 kb on - strand, within Dsui_1255at 1317.916 kb on + strand, within Dsui_1255at 1317.928 kb on + strand, within Dsui_1255at 1317.936 kb on - strand, within Dsui_1255at 1318.004 kb on - strand, within Dsui_1255at 1318.025 kb on - strand, within Dsui_1255at 1318.057 kb on + strandat 1318.083 kb on + strand, within Dsui_1255at 1318.083 kb on - strand, within Dsui_1255at 1318.125 kb on - strand, within Dsui_1255at 1318.140 kb on - strand, within Dsui_1255at 1318.151 kb on - strand, within Dsui_1255at 1318.285 kb on - strandat 1318.315 kb on - strand, within Dsui_1256at 1318.359 kb on - strand, within Dsui_1256at 1318.488 kb on - strand, within Dsui_1256at 1318.502 kb on - strand, within Dsui_1256at 1318.549 kb on + strandat 1318.554 kb on + strandat 1318.557 kb on - strandat 1318.557 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
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1,317,309 - Dsui_1254 0.79 -0.2
1,317,328 - Dsui_1254 0.79 -0.5
1,317,390 + Dsui_1254 0.83 +0.1
1,317,420 - Dsui_1254 0.84 +0.7
1,317,427 + Dsui_1254 0.84 +0.1
1,317,589 - +0.1
1,317,589 - +0.2
1,317,594 - -0.1
1,317,599 - -0.2
1,317,619 + -0.0
1,317,627 - -1.7
1,317,627 - -0.8
1,317,645 - +0.7
1,317,648 + +0.1
1,317,763 - +0.5
1,317,773 - -1.1
1,317,823 + -0.6
1,317,856 - Dsui_1255 0.12 +1.3
1,317,916 + Dsui_1255 0.25 -1.1
1,317,928 + Dsui_1255 0.27 +0.1
1,317,936 - Dsui_1255 0.29 +1.4
1,318,004 - Dsui_1255 0.43 +0.7
1,318,025 - Dsui_1255 0.47 +1.6
1,318,057 + +0.4
1,318,083 + Dsui_1255 0.59 -0.8
1,318,083 - Dsui_1255 0.59 +2.0
1,318,125 - Dsui_1255 0.68 +0.5
1,318,140 - Dsui_1255 0.71 +0.7
1,318,151 - Dsui_1255 0.73 +0.6
1,318,285 - +0.4
1,318,315 - Dsui_1256 0.11 +1.4
1,318,359 - Dsui_1256 0.29 +0.7
1,318,488 - Dsui_1256 0.79 +0.8
1,318,502 - Dsui_1256 0.85 +1.2
1,318,549 + +0.0
1,318,554 + -0.9
1,318,557 - +1.3
1,318,557 - -3.7

Or see this region's nucleotide sequence