Strain Fitness in Dechlorosoma suillum PS around Dsui_1018

Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1017 and Dsui_1018 are separated by 588 nucleotidesDsui_1018 and Dsui_1019 overlap by 30 nucleotides Dsui_1017: Dsui_1017 - hypothetical protein, at 1,050,402 to 1,050,809 _1017 Dsui_1018: Dsui_1018 - hypothetical protein, at 1,051,398 to 1,051,616 _1018 Dsui_1019: Dsui_1019 - transposase, at 1,051,587 to 1,052,387 _1019 Position (kb) 1051 1052Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1050.420 kb on + strandat 1050.428 kb on - strandat 1050.443 kb on + strand, within Dsui_1017at 1050.475 kb on - strand, within Dsui_1017at 1050.522 kb on + strand, within Dsui_1017at 1050.537 kb on + strand, within Dsui_1017at 1050.568 kb on + strand, within Dsui_1017at 1050.572 kb on + strand, within Dsui_1017at 1050.580 kb on - strand, within Dsui_1017at 1050.613 kb on - strand, within Dsui_1017at 1050.669 kb on - strand, within Dsui_1017at 1050.687 kb on + strand, within Dsui_1017at 1050.694 kb on - strand, within Dsui_1017at 1050.695 kb on - strand, within Dsui_1017at 1050.695 kb on - strand, within Dsui_1017at 1050.697 kb on + strand, within Dsui_1017at 1050.698 kb on + strand, within Dsui_1017at 1050.743 kb on - strand, within Dsui_1017at 1050.821 kb on - strandat 1050.835 kb on - strandat 1050.847 kb on - strandat 1050.863 kb on + strandat 1050.938 kb on + strandat 1050.938 kb on + strandat 1050.943 kb on + strandat 1050.986 kb on + strandat 1051.031 kb on - strandat 1051.031 kb on - strandat 1051.044 kb on + strandat 1051.059 kb on - strandat 1051.139 kb on + strandat 1051.142 kb on + strandat 1051.142 kb on + strandat 1051.142 kb on + strandat 1051.150 kb on - strandat 1051.253 kb on + strandat 1051.253 kb on + strandat 1051.254 kb on - strandat 1051.285 kb on + strandat 1051.293 kb on - strandat 1051.297 kb on - strandat 1051.385 kb on + strandat 1051.454 kb on + strand, within Dsui_1018at 1051.475 kb on + strand, within Dsui_1018at 1051.527 kb on - strand, within Dsui_1018at 1051.535 kb on + strand, within Dsui_1018at 1051.543 kb on - strand, within Dsui_1018at 1051.554 kb on - strand, within Dsui_1018at 1051.554 kb on - strand, within Dsui_1018at 1051.572 kb on - strand, within Dsui_1018at 1051.573 kb on - strand, within Dsui_1018at 1051.573 kb on - strand, within Dsui_1018at 1051.594 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
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1,050,420 + +2.1
1,050,428 - -4.2
1,050,443 + Dsui_1017 0.10 +0.8
1,050,475 - Dsui_1017 0.18 -1.0
1,050,522 + Dsui_1017 0.29 +1.4
1,050,537 + Dsui_1017 0.33 -1.5
1,050,568 + Dsui_1017 0.41 +1.4
1,050,572 + Dsui_1017 0.42 +0.7
1,050,580 - Dsui_1017 0.44 -2.1
1,050,613 - Dsui_1017 0.52 +1.7
1,050,669 - Dsui_1017 0.65 -1.1
1,050,687 + Dsui_1017 0.70 -1.3
1,050,694 - Dsui_1017 0.72 -0.1
1,050,695 - Dsui_1017 0.72 +1.3
1,050,695 - Dsui_1017 0.72 +1.2
1,050,697 + Dsui_1017 0.72 +0.5
1,050,698 + Dsui_1017 0.73 +1.5
1,050,743 - Dsui_1017 0.84 +0.9
1,050,821 - +0.6
1,050,835 - +0.1
1,050,847 - +0.6
1,050,863 + -0.9
1,050,938 + +0.4
1,050,938 + +1.6
1,050,943 + -2.9
1,050,986 + -1.7
1,051,031 - -1.0
1,051,031 - +0.4
1,051,044 + -0.3
1,051,059 - -0.5
1,051,139 + +0.5
1,051,142 + +1.3
1,051,142 + +0.8
1,051,142 + +1.2
1,051,150 - -0.7
1,051,253 + +1.1
1,051,253 + +0.6
1,051,254 - +0.3
1,051,285 + -3.2
1,051,293 - +0.2
1,051,297 - -0.3
1,051,385 + +1.1
1,051,454 + Dsui_1018 0.26 +1.1
1,051,475 + Dsui_1018 0.35 +0.5
1,051,527 - Dsui_1018 0.59 +1.3
1,051,535 + Dsui_1018 0.63 +0.5
1,051,543 - Dsui_1018 0.66 +0.6
1,051,554 - Dsui_1018 0.71 +0.4
1,051,554 - Dsui_1018 0.71 +1.3
1,051,572 - Dsui_1018 0.79 +0.6
1,051,573 - Dsui_1018 0.80 -0.3
1,051,573 - Dsui_1018 0.80 -3.6
1,051,594 - -0.0

Or see this region's nucleotide sequence