Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0562 and Dsui_0563 are separated by 125 nucleotides Dsui_0563 and Dsui_0564 overlap by 11 nucleotides Dsui_0564 and Dsui_0565 are separated by 213 nucleotides Dsui_0565 and Dsui_0566 are separated by 38 nucleotides
Dsui_0562: Dsui_0562 - molybdenum ABC transporter, periplasmic molybdate-binding protein, at 562,367 to 563,146
_0562
Dsui_0563: Dsui_0563 - molybdate ABC transporter, permease protein, at 563,272 to 563,952
_0563
Dsui_0564: Dsui_0564 - molybdenum ABC transporter, ATP-binding protein, at 563,942 to 565,039
_0564
Dsui_0565: Dsui_0565 - hypothetical protein, at 565,253 to 565,639
_0565
Dsui_0566: Dsui_0566 - putative molybdenum utilization protein ModD, at 565,678 to 566,568
_0566
Position (kb) 563
564
565
566 Strain fitness (log2 ratio) -8
-7
-6
-5
-4
-3
-2
-1
0
1 at 562.963 kb on + strand, within Dsui_0562 at 562.971 kb on - strand, within Dsui_0562 at 562.971 kb on - strand, within Dsui_0562 at 562.971 kb on - strand, within Dsui_0562 at 562.971 kb on - strand, within Dsui_0562 at 562.971 kb on - strand, within Dsui_0562 at 562.983 kb on + strand, within Dsui_0562 at 563.010 kb on - strand, within Dsui_0562 at 563.010 kb on - strand, within Dsui_0562 at 563.048 kb on + strand, within Dsui_0562 at 563.053 kb on + strand, within Dsui_0562 at 563.067 kb on - strand, within Dsui_0562 at 563.083 kb on + strand at 563.107 kb on + strand at 563.115 kb on - strand at 563.258 kb on + strand at 563.266 kb on - strand at 563.312 kb on + strand at 563.312 kb on + strand at 563.320 kb on - strand at 563.322 kb on + strand at 563.433 kb on - strand, within Dsui_0563 at 563.442 kb on + strand, within Dsui_0563 at 563.467 kb on - strand, within Dsui_0563 at 563.535 kb on + strand, within Dsui_0563 at 563.536 kb on + strand, within Dsui_0563 at 563.536 kb on + strand, within Dsui_0563 at 563.571 kb on + strand, within Dsui_0563 at 563.571 kb on + strand, within Dsui_0563 at 563.579 kb on - strand, within Dsui_0563 at 563.588 kb on + strand, within Dsui_0563 at 563.593 kb on + strand, within Dsui_0563 at 563.601 kb on - strand, within Dsui_0563 at 563.731 kb on + strand, within Dsui_0563 at 563.750 kb on - strand, within Dsui_0563 at 563.751 kb on - strand, within Dsui_0563 at 563.832 kb on - strand, within Dsui_0563 at 563.835 kb on + strand, within Dsui_0563 at 563.843 kb on - strand, within Dsui_0563 at 564.086 kb on + strand, within Dsui_0564 at 564.132 kb on + strand, within Dsui_0564 at 564.132 kb on + strand, within Dsui_0564 at 564.132 kb on + strand, within Dsui_0564 at 564.208 kb on - strand, within Dsui_0564 at 564.235 kb on + strand, within Dsui_0564 at 564.303 kb on - strand, within Dsui_0564 at 564.317 kb on + strand, within Dsui_0564 at 564.345 kb on - strand, within Dsui_0564 at 564.345 kb on - strand, within Dsui_0564 at 564.346 kb on - strand, within Dsui_0564 at 564.470 kb on + strand, within Dsui_0564 at 564.570 kb on + strand, within Dsui_0564 at 564.572 kb on - strand at 564.578 kb on - strand, within Dsui_0564 at 564.974 kb on - strand at 564.983 kb on - strand at 565.020 kb on - strand at 565.072 kb on - strand at 565.137 kb on - strand at 565.212 kb on + strand at 565.289 kb on + strand at 565.297 kb on - strand at 565.388 kb on - strand at 565.392 kb on - strand, within Dsui_0565 at 565.432 kb on - strand at 565.442 kb on - strand, within Dsui_0565 at 565.573 kb on - strand, within Dsui_0565 at 565.587 kb on + strand at 565.984 kb on + strand at 565.992 kb on - strand, within Dsui_0566
Per-strain Table
Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours remove 562,963 + Dsui_0562 0.76 -5.4 562,971 - Dsui_0562 0.77 -6.5 562,971 - Dsui_0562 0.77 -4.9 562,971 - Dsui_0562 0.77 -5.8 562,971 - Dsui_0562 0.77 -6.5 562,971 - Dsui_0562 0.77 -4.4 562,983 + Dsui_0562 0.79 -4.3 563,010 - Dsui_0562 0.82 -4.8 563,010 - Dsui_0562 0.82 -4.9 563,048 + Dsui_0562 0.87 -5.8 563,053 + Dsui_0562 0.88 -4.7 563,067 - Dsui_0562 0.90 -4.7 563,083 + -2.4 563,107 + -1.7 563,115 - -6.0 563,258 + -2.8 563,266 - +0.1 563,312 + -5.0 563,312 + -5.3 563,320 - -4.2 563,322 + -3.6 563,433 - Dsui_0563 0.24 -3.3 563,442 + Dsui_0563 0.25 -5.5 563,467 - Dsui_0563 0.29 -4.8 563,535 + Dsui_0563 0.39 -4.9 563,536 + Dsui_0563 0.39 -4.8 563,536 + Dsui_0563 0.39 -4.9 563,571 + Dsui_0563 0.44 -3.7 563,571 + Dsui_0563 0.44 -4.8 563,579 - Dsui_0563 0.45 -5.4 563,588 + Dsui_0563 0.46 -6.0 563,593 + Dsui_0563 0.47 -2.6 563,601 - Dsui_0563 0.48 -6.8 563,731 + Dsui_0563 0.67 -6.1 563,750 - Dsui_0563 0.70 -5.6 563,751 - Dsui_0563 0.70 -4.4 563,832 - Dsui_0563 0.82 -2.8 563,835 + Dsui_0563 0.83 -6.6 563,843 - Dsui_0563 0.84 -6.0 564,086 + Dsui_0564 0.13 -7.3 564,132 + Dsui_0564 0.17 -7.0 564,132 + Dsui_0564 0.17 -3.9 564,132 + Dsui_0564 0.17 -5.9 564,208 - Dsui_0564 0.24 -4.7 564,235 + Dsui_0564 0.27 -8.5 564,303 - Dsui_0564 0.33 -7.1 564,317 + Dsui_0564 0.34 -5.1 564,345 - Dsui_0564 0.37 -4.4 564,345 - Dsui_0564 0.37 -2.3 564,346 - Dsui_0564 0.37 -3.3 564,470 + Dsui_0564 0.48 -5.2 564,570 + Dsui_0564 0.57 -5.2 564,572 - -3.1 564,578 - Dsui_0564 0.58 -5.9 564,974 - -4.2 564,983 - -5.3 565,020 - -4.0 565,072 - +0.8 565,137 - -0.7 565,212 + -0.9 565,289 + -0.3 565,297 - +0.2 565,388 - -3.8 565,392 - Dsui_0565 0.36 -1.0 565,432 - +0.8 565,442 - Dsui_0565 0.49 -1.9 565,573 - Dsui_0565 0.83 +0.9 565,587 + +0.3 565,984 + -0.3 565,992 - Dsui_0566 0.35 +0.5
Or see this region's nucleotide sequence