Strain Fitness in Dechlorosoma suillum PS around Dsui_0304

Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0302 and Dsui_0303 are separated by 7 nucleotidesDsui_0303 and Dsui_0304 are separated by 36 nucleotidesDsui_0304 and Dsui_0305 are separated by 53 nucleotides Dsui_0302: Dsui_0302 - UbiD family decarboxylase, at 303,503 to 304,978 _0302 Dsui_0303: Dsui_0303 - 4-hydroxybenzoate polyprenyl transferase, proteobacterial, at 304,986 to 305,897 _0303 Dsui_0304: Dsui_0304 - hypothetical protein, at 305,934 to 306,182 _0304 Dsui_0305: Dsui_0305 - transcriptional regulator, at 306,236 to 307,129 _0305 Position (kb) 305 306 307Strain fitness (log2 ratio) -3 -2 -1 0 1at 305.033 kb on - strandat 305.992 kb on - strand, within Dsui_0304at 306.044 kb on + strandat 306.100 kb on - strand, within Dsui_0304at 306.103 kb on + strandat 306.107 kb on + strand, within Dsui_0304at 306.185 kb on - strandat 306.259 kb on - strandat 306.286 kb on - strandat 306.323 kb on - strandat 306.333 kb on + strand, within Dsui_0305at 306.424 kb on + strand, within Dsui_0305at 306.481 kb on + strandat 306.665 kb on - strand, within Dsui_0305at 306.692 kb on + strandat 306.715 kb on - strand, within Dsui_0305at 306.733 kb on + strand, within Dsui_0305at 306.770 kb on + strandat 306.918 kb on + strandat 306.988 kb on + strand, within Dsui_0305at 307.077 kb on - strandat 307.109 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
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305,033 - -2.0
305,992 - Dsui_0304 0.23 +0.3
306,044 + -0.6
306,100 - Dsui_0304 0.67 +0.4
306,103 + +1.2
306,107 + Dsui_0304 0.69 -0.4
306,185 - +0.9
306,259 - +1.2
306,286 - +0.2
306,323 - +1.0
306,333 + Dsui_0305 0.11 -0.0
306,424 + Dsui_0305 0.21 -0.3
306,481 + -3.0
306,665 - Dsui_0305 0.48 +1.2
306,692 + +0.4
306,715 - Dsui_0305 0.54 +0.5
306,733 + Dsui_0305 0.56 -0.1
306,770 + -2.7
306,918 + +0.1
306,988 + Dsui_0305 0.84 -1.2
307,077 - +0.7
307,109 + -1.7

Or see this region's nucleotide sequence