Strain Fitness in Dechlorosoma suillum PS around Dsui_0085

Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0084 and Dsui_0085 are separated by 303 nucleotidesDsui_0085 and Dsui_0086 are separated by 14 nucleotidesDsui_0086 and Dsui_0087 overlap by 4 nucleotides Dsui_0084: Dsui_0084 - ABC-type bacteriocin/lantibiotic exporter with N-terminal double-glycine peptidase domain, at 81,265 to 83,040 _0084 Dsui_0085: Dsui_0085 - GDP-mannose 4,6-dehydratase, at 83,344 to 84,435 _0085 Dsui_0086: Dsui_0086 - nucleoside-diphosphate-sugar epimerase, at 84,450 to 85,421 _0086 Dsui_0087: Dsui_0087 - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase, at 85,418 to 86,854 _0087 Position (kb) 83 84 85Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 82.352 kb on + strand, within Dsui_0084at 82.387 kb on - strand, within Dsui_0084at 82.484 kb on + strand, within Dsui_0084at 82.493 kb on - strand, within Dsui_0084at 82.494 kb on + strand, within Dsui_0084at 82.499 kb on + strand, within Dsui_0084at 82.502 kb on - strand, within Dsui_0084at 82.533 kb on + strand, within Dsui_0084at 82.541 kb on - strand, within Dsui_0084at 82.605 kb on - strand, within Dsui_0084at 82.654 kb on - strand, within Dsui_0084at 82.654 kb on - strand, within Dsui_0084at 82.654 kb on - strand, within Dsui_0084at 82.689 kb on + strand, within Dsui_0084at 82.697 kb on - strand, within Dsui_0084at 82.697 kb on - strand, within Dsui_0084at 82.748 kb on - strand, within Dsui_0084at 82.782 kb on + strand, within Dsui_0084at 82.787 kb on - strand, within Dsui_0084at 82.789 kb on + strand, within Dsui_0084at 82.812 kb on + strand, within Dsui_0084at 82.816 kb on - strand, within Dsui_0084at 82.840 kb on - strand, within Dsui_0084at 82.910 kb on + strandat 82.927 kb on - strandat 82.937 kb on - strandat 82.937 kb on - strandat 82.945 kb on - strandat 82.968 kb on - strandat 83.002 kb on - strandat 83.008 kb on + strandat 83.034 kb on + strandat 83.116 kb on - strandat 83.133 kb on - strandat 83.150 kb on - strandat 83.168 kb on + strandat 83.168 kb on + strandat 83.168 kb on + strandat 83.168 kb on + strandat 83.168 kb on + strandat 83.168 kb on + strandat 83.168 kb on + strandat 83.168 kb on + strandat 83.168 kb on + strandat 83.176 kb on - strandat 83.176 kb on - strandat 83.176 kb on - strandat 83.176 kb on - strandat 83.176 kb on - strandat 83.176 kb on - strandat 83.176 kb on - strandat 83.176 kb on - strandat 83.202 kb on - strandat 83.263 kb on + strandat 83.290 kb on + strandat 83.298 kb on - strandat 83.298 kb on - strandat 83.298 kb on - strandat 83.298 kb on - strandat 83.303 kb on - strandat 83.356 kb on + strandat 83.356 kb on + strandat 83.371 kb on - strandat 83.371 kb on - strandat 83.405 kb on + strandat 83.407 kb on + strandat 83.407 kb on + strandat 83.413 kb on - strandat 83.413 kb on - strandat 83.415 kb on - strandat 83.415 kb on - strandat 83.415 kb on - strandat 83.426 kb on + strandat 83.535 kb on - strand, within Dsui_0085at 83.577 kb on - strand, within Dsui_0085at 83.607 kb on - strand, within Dsui_0085at 83.630 kb on - strand, within Dsui_0085at 83.654 kb on + strand, within Dsui_0085at 83.655 kb on - strand, within Dsui_0085at 83.659 kb on + strand, within Dsui_0085at 83.659 kb on + strand, within Dsui_0085at 83.665 kb on - strand, within Dsui_0085at 83.667 kb on - strand, within Dsui_0085at 83.747 kb on + strand, within Dsui_0085at 83.762 kb on + strand, within Dsui_0085at 83.773 kb on + strand, within Dsui_0085at 83.795 kb on + strand, within Dsui_0085at 83.796 kb on - strand, within Dsui_0085at 83.802 kb on + strand, within Dsui_0085at 83.804 kb on - strand, within Dsui_0085at 83.864 kb on - strand, within Dsui_0085at 83.885 kb on + strand, within Dsui_0085at 83.893 kb on + strand, within Dsui_0085at 83.893 kb on + strand, within Dsui_0085at 83.894 kb on - strand, within Dsui_0085at 83.895 kb on + strand, within Dsui_0085at 83.901 kb on - strand, within Dsui_0085at 83.916 kb on - strand, within Dsui_0085at 83.939 kb on + strand, within Dsui_0085at 83.939 kb on + strand, within Dsui_0085at 83.947 kb on - strand, within Dsui_0085at 83.947 kb on - strand, within Dsui_0085at 83.947 kb on - strand, within Dsui_0085at 83.947 kb on - strand, within Dsui_0085at 83.947 kb on - strand, within Dsui_0085at 83.947 kb on - strand, within Dsui_0085at 83.958 kb on + strandat 83.958 kb on + strand, within Dsui_0085at 83.964 kb on - strand, within Dsui_0085at 83.966 kb on - strand, within Dsui_0085at 84.009 kb on + strand, within Dsui_0085at 84.024 kb on + strand, within Dsui_0085at 84.024 kb on + strand, within Dsui_0085at 84.024 kb on + strandat 84.032 kb on - strand, within Dsui_0085at 84.032 kb on - strand, within Dsui_0085at 84.032 kb on - strand, within Dsui_0085at 84.032 kb on - strand, within Dsui_0085at 84.032 kb on - strand, within Dsui_0085at 84.084 kb on + strand, within Dsui_0085at 84.102 kb on + strand, within Dsui_0085at 84.108 kb on - strand, within Dsui_0085at 84.110 kb on - strand, within Dsui_0085at 84.124 kb on + strand, within Dsui_0085at 84.145 kb on + strand, within Dsui_0085at 84.160 kb on + strand, within Dsui_0085at 84.160 kb on + strand, within Dsui_0085at 84.168 kb on - strand, within Dsui_0085at 84.168 kb on - strand, within Dsui_0085at 84.219 kb on + strand, within Dsui_0085at 84.219 kb on + strand, within Dsui_0085at 84.219 kb on + strand, within Dsui_0085at 84.219 kb on + strand, within Dsui_0085at 84.219 kb on + strand, within Dsui_0085at 84.219 kb on + strand, within Dsui_0085at 84.219 kb on + strand, within Dsui_0085at 84.219 kb on + strand, within Dsui_0085at 84.227 kb on - strand, within Dsui_0085at 84.227 kb on - strand, within Dsui_0085at 84.227 kb on - strand, within Dsui_0085at 84.227 kb on - strand, within Dsui_0085at 84.227 kb on - strand, within Dsui_0085at 84.227 kb on - strand, within Dsui_0085at 84.292 kb on - strand, within Dsui_0085at 84.293 kb on - strand, within Dsui_0085at 84.308 kb on + strand, within Dsui_0085at 84.345 kb on + strandat 84.347 kb on + strandat 84.347 kb on + strandat 84.354 kb on - strandat 84.355 kb on - strandat 84.378 kb on + strandat 84.382 kb on + strandat 84.404 kb on + strandat 84.412 kb on - strandat 84.425 kb on + strandat 84.439 kb on + strandat 84.439 kb on + strandat 84.447 kb on - strandat 84.447 kb on - strandat 84.483 kb on + strandat 84.483 kb on + strandat 84.491 kb on - strandat 84.491 kb on - strandat 84.491 kb on - strandat 84.501 kb on + strandat 84.545 kb on + strandat 84.545 kb on + strandat 84.581 kb on - strand, within Dsui_0086at 84.690 kb on + strand, within Dsui_0086at 84.765 kb on - strand, within Dsui_0086at 84.773 kb on + strand, within Dsui_0086at 84.804 kb on + strand, within Dsui_0086at 84.804 kb on + strand, within Dsui_0086at 84.843 kb on - strand, within Dsui_0086at 84.858 kb on + strand, within Dsui_0086at 84.858 kb on + strand, within Dsui_0086at 84.907 kb on + strand, within Dsui_0086at 84.959 kb on - strand, within Dsui_0086at 84.977 kb on + strand, within Dsui_0086at 84.985 kb on - strand, within Dsui_0086at 84.985 kb on - strand, within Dsui_0086at 85.022 kb on + strand, within Dsui_0086at 85.022 kb on + strand, within Dsui_0086at 85.030 kb on - strand, within Dsui_0086at 85.030 kb on - strand, within Dsui_0086at 85.030 kb on - strand, within Dsui_0086at 85.030 kb on - strand, within Dsui_0086at 85.030 kb on - strand, within Dsui_0086at 85.030 kb on - strand, within Dsui_0086at 85.040 kb on + strandat 85.048 kb on - strand, within Dsui_0086at 85.073 kb on + strand, within Dsui_0086at 85.073 kb on + strand, within Dsui_0086at 85.164 kb on - strand, within Dsui_0086at 85.187 kb on + strand, within Dsui_0086at 85.218 kb on - strand, within Dsui_0086at 85.231 kb on + strand, within Dsui_0086at 85.326 kb on - strandat 85.422 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
remove
82,352 + Dsui_0084 0.61 -2.4
82,387 - Dsui_0084 0.63 -2.0
82,484 + Dsui_0084 0.69 -2.5
82,493 - Dsui_0084 0.69 -3.0
82,494 + Dsui_0084 0.69 -3.1
82,499 + Dsui_0084 0.69 -5.2
82,502 - Dsui_0084 0.70 -2.1
82,533 + Dsui_0084 0.71 -2.4
82,541 - Dsui_0084 0.72 -1.6
82,605 - Dsui_0084 0.75 -0.7
82,654 - Dsui_0084 0.78 -0.5
82,654 - Dsui_0084 0.78 -3.0
82,654 - Dsui_0084 0.78 -1.9
82,689 + Dsui_0084 0.80 -1.2
82,697 - Dsui_0084 0.81 -2.1
82,697 - Dsui_0084 0.81 -0.8
82,748 - Dsui_0084 0.84 +1.1
82,782 + Dsui_0084 0.85 -2.6
82,787 - Dsui_0084 0.86 +1.9
82,789 + Dsui_0084 0.86 -1.2
82,812 + Dsui_0084 0.87 -2.4
82,816 - Dsui_0084 0.87 -2.7
82,840 - Dsui_0084 0.89 -2.1
82,910 + -0.9
82,927 - -1.8
82,937 - -1.3
82,937 - +0.2
82,945 - -2.9
82,968 - -1.7
83,002 - -1.9
83,008 + -1.9
83,034 + -1.0
83,116 - +1.1
83,133 - +1.5
83,150 - +1.3
83,168 + -1.1
83,168 + -2.4
83,168 + +0.1
83,168 + -0.1
83,168 + -0.1
83,168 + +0.2
83,168 + -0.0
83,168 + +1.6
83,168 + +2.4
83,176 - +0.6
83,176 - +0.8
83,176 - +0.5
83,176 - +0.4
83,176 - +0.6
83,176 - +1.2
83,176 - +0.7
83,176 - +0.8
83,202 - +0.6
83,263 + +1.3
83,290 + +0.6
83,298 - +1.3
83,298 - +1.0
83,298 - +1.7
83,298 - +1.1
83,303 - +1.6
83,356 + -2.4
83,356 + -1.0
83,371 - -1.0
83,371 - +1.1
83,405 + -2.8
83,407 + -3.8
83,407 + -0.2
83,413 - +0.4
83,413 - -0.4
83,415 - +1.3
83,415 - -2.6
83,415 - -0.6
83,426 + -3.0
83,535 - Dsui_0085 0.17 -2.2
83,577 - Dsui_0085 0.21 -0.2
83,607 - Dsui_0085 0.24 -3.0
83,630 - Dsui_0085 0.26 -2.4
83,654 + Dsui_0085 0.28 -1.3
83,655 - Dsui_0085 0.28 -1.3
83,659 + Dsui_0085 0.29 -1.4
83,659 + Dsui_0085 0.29 -2.9
83,665 - Dsui_0085 0.29 -0.7
83,667 - Dsui_0085 0.30 -1.3
83,747 + Dsui_0085 0.37 -3.2
83,762 + Dsui_0085 0.38 +1.3
83,773 + Dsui_0085 0.39 -1.3
83,795 + Dsui_0085 0.41 -2.7
83,796 - Dsui_0085 0.41 -1.9
83,802 + Dsui_0085 0.42 -3.0
83,804 - Dsui_0085 0.42 -2.8
83,864 - Dsui_0085 0.48 -2.2
83,885 + Dsui_0085 0.50 -3.1
83,893 + Dsui_0085 0.50 -1.9
83,893 + Dsui_0085 0.50 -1.0
83,894 - Dsui_0085 0.50 -2.5
83,895 + Dsui_0085 0.50 -1.3
83,901 - Dsui_0085 0.51 -3.6
83,916 - Dsui_0085 0.52 -2.6
83,939 + Dsui_0085 0.54 -2.2
83,939 + Dsui_0085 0.54 -1.3
83,947 - Dsui_0085 0.55 -3.9
83,947 - Dsui_0085 0.55 -1.7
83,947 - Dsui_0085 0.55 -5.4
83,947 - Dsui_0085 0.55 -2.2
83,947 - Dsui_0085 0.55 -3.6
83,947 - Dsui_0085 0.55 -1.3
83,958 + +1.3
83,958 + Dsui_0085 0.56 -3.0
83,964 - Dsui_0085 0.57 -3.3
83,966 - Dsui_0085 0.57 -3.0
84,009 + Dsui_0085 0.61 -2.5
84,024 + Dsui_0085 0.62 -2.5
84,024 + Dsui_0085 0.62 -1.3
84,024 + -0.7
84,032 - Dsui_0085 0.63 -2.6
84,032 - Dsui_0085 0.63 -2.2
84,032 - Dsui_0085 0.63 -2.9
84,032 - Dsui_0085 0.63 -4.9
84,032 - Dsui_0085 0.63 -2.5
84,084 + Dsui_0085 0.68 -1.9
84,102 + Dsui_0085 0.69 -2.2
84,108 - Dsui_0085 0.70 -1.0
84,110 - Dsui_0085 0.70 -4.5
84,124 + Dsui_0085 0.71 -4.3
84,145 + Dsui_0085 0.73 -0.3
84,160 + Dsui_0085 0.75 -0.7
84,160 + Dsui_0085 0.75 -3.6
84,168 - Dsui_0085 0.75 -4.4
84,168 - Dsui_0085 0.75 -2.9
84,219 + Dsui_0085 0.80 -2.8
84,219 + Dsui_0085 0.80 -1.9
84,219 + Dsui_0085 0.80 -2.7
84,219 + Dsui_0085 0.80 -1.7
84,219 + Dsui_0085 0.80 -1.0
84,219 + Dsui_0085 0.80 -2.8
84,219 + Dsui_0085 0.80 -3.5
84,219 + Dsui_0085 0.80 +1.3
84,227 - Dsui_0085 0.81 +1.3
84,227 - Dsui_0085 0.81 -1.5
84,227 - Dsui_0085 0.81 -0.3
84,227 - Dsui_0085 0.81 -3.5
84,227 - Dsui_0085 0.81 -2.7
84,227 - Dsui_0085 0.81 -3.0
84,292 - Dsui_0085 0.87 -3.0
84,293 - Dsui_0085 0.87 -1.1
84,308 + Dsui_0085 0.88 -3.1
84,345 + -4.0
84,347 + -1.5
84,347 + -2.8
84,354 - -1.1
84,355 - -3.0
84,378 + +0.5
84,382 + -1.3
84,404 + -1.0
84,412 - -3.2
84,425 + -2.3
84,439 + -3.3
84,439 + -4.3
84,447 - -0.1
84,447 - -3.0
84,483 + -1.3
84,483 + +0.3
84,491 - -2.0
84,491 - -3.5
84,491 - -1.4
84,501 + -0.7
84,545 + -1.7
84,545 + +1.3
84,581 - Dsui_0086 0.13 -3.6
84,690 + Dsui_0086 0.25 -2.4
84,765 - Dsui_0086 0.32 -2.7
84,773 + Dsui_0086 0.33 -2.9
84,804 + Dsui_0086 0.36 -2.8
84,804 + Dsui_0086 0.36 -1.0
84,843 - Dsui_0086 0.40 -4.2
84,858 + Dsui_0086 0.42 +0.3
84,858 + Dsui_0086 0.42 -3.0
84,907 + Dsui_0086 0.47 -1.3
84,959 - Dsui_0086 0.52 -2.6
84,977 + Dsui_0086 0.54 -2.8
84,985 - Dsui_0086 0.55 -2.1
84,985 - Dsui_0086 0.55 -2.7
85,022 + Dsui_0086 0.59 -2.9
85,022 + Dsui_0086 0.59 -1.3
85,030 - Dsui_0086 0.60 -1.5
85,030 - Dsui_0086 0.60 +0.3
85,030 - Dsui_0086 0.60 +1.3
85,030 - Dsui_0086 0.60 -0.7
85,030 - Dsui_0086 0.60 -1.5
85,030 - Dsui_0086 0.60 -2.3
85,040 + +1.3
85,048 - Dsui_0086 0.62 -3.2
85,073 + Dsui_0086 0.64 -4.2
85,073 + Dsui_0086 0.64 -2.0
85,164 - Dsui_0086 0.73 -4.3
85,187 + Dsui_0086 0.76 +3.3
85,218 - Dsui_0086 0.79 -0.7
85,231 + Dsui_0086 0.80 -2.6
85,326 - -2.4
85,422 - +1.2

Or see this region's nucleotide sequence