Strain Fitness in Dechlorosoma suillum PS around Dsui_0084

Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0083 and Dsui_0084 are separated by 10 nucleotidesDsui_0084 and Dsui_0085 are separated by 303 nucleotides Dsui_0083: Dsui_0083 - UDP-N-acetylglucosamine 4,6-dehydratase, at 80,256 to 81,254 _0083 Dsui_0084: Dsui_0084 - ABC-type bacteriocin/lantibiotic exporter with N-terminal double-glycine peptidase domain, at 81,265 to 83,040 _0084 Dsui_0085: Dsui_0085 - GDP-mannose 4,6-dehydratase, at 83,344 to 84,435 _0085 Position (kb) 81 82 83 84Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 80.295 kb on + strandat 80.298 kb on - strandat 80.344 kb on - strandat 80.346 kb on + strandat 80.346 kb on + strandat 80.353 kb on - strandat 80.354 kb on - strandat 80.354 kb on - strandat 80.413 kb on + strand, within Dsui_0083at 80.422 kb on + strand, within Dsui_0083at 80.459 kb on - strand, within Dsui_0083at 80.470 kb on + strand, within Dsui_0083at 80.472 kb on + strand, within Dsui_0083at 80.472 kb on - strand, within Dsui_0083at 80.534 kb on - strand, within Dsui_0083at 80.550 kb on - strand, within Dsui_0083at 80.561 kb on + strand, within Dsui_0083at 80.615 kb on + strand, within Dsui_0083at 80.628 kb on - strand, within Dsui_0083at 80.628 kb on - strand, within Dsui_0083at 80.630 kb on + strand, within Dsui_0083at 80.630 kb on + strand, within Dsui_0083at 80.642 kb on + strand, within Dsui_0083at 80.642 kb on + strand, within Dsui_0083at 80.664 kb on + strand, within Dsui_0083at 80.690 kb on + strand, within Dsui_0083at 80.708 kb on - strand, within Dsui_0083at 80.730 kb on - strand, within Dsui_0083at 80.845 kb on + strand, within Dsui_0083at 80.860 kb on - strand, within Dsui_0083at 80.863 kb on + strand, within Dsui_0083at 80.863 kb on + strand, within Dsui_0083at 80.871 kb on - strand, within Dsui_0083at 80.887 kb on + strand, within Dsui_0083at 80.888 kb on - strand, within Dsui_0083at 80.931 kb on - strand, within Dsui_0083at 80.976 kb on + strand, within Dsui_0083at 80.976 kb on + strand, within Dsui_0083at 80.979 kb on - strand, within Dsui_0083at 80.984 kb on - strand, within Dsui_0083at 80.984 kb on - strand, within Dsui_0083at 80.984 kb on - strand, within Dsui_0083at 80.984 kb on - strand, within Dsui_0083at 80.984 kb on - strand, within Dsui_0083at 80.986 kb on + strand, within Dsui_0083at 81.010 kb on + strand, within Dsui_0083at 81.010 kb on + strand, within Dsui_0083at 81.033 kb on + strand, within Dsui_0083at 81.166 kb on + strandat 81.172 kb on + strandat 81.174 kb on - strandat 81.174 kb on - strandat 81.251 kb on + strandat 81.290 kb on - strandat 81.322 kb on - strandat 81.374 kb on - strandat 81.392 kb on + strandat 81.395 kb on + strandat 81.403 kb on - strandat 81.490 kb on - strand, within Dsui_0084at 81.490 kb on - strand, within Dsui_0084at 81.492 kb on - strand, within Dsui_0084at 81.492 kb on - strand, within Dsui_0084at 81.583 kb on - strand, within Dsui_0084at 81.712 kb on - strand, within Dsui_0084at 81.765 kb on + strand, within Dsui_0084at 81.799 kb on + strand, within Dsui_0084at 81.817 kb on + strand, within Dsui_0084at 81.825 kb on - strand, within Dsui_0084at 81.859 kb on - strand, within Dsui_0084at 81.893 kb on + strand, within Dsui_0084at 81.976 kb on + strand, within Dsui_0084at 81.998 kb on + strand, within Dsui_0084at 82.012 kb on - strand, within Dsui_0084at 82.115 kb on + strand, within Dsui_0084at 82.178 kb on - strand, within Dsui_0084at 82.183 kb on - strand, within Dsui_0084at 82.188 kb on + strand, within Dsui_0084at 82.207 kb on + strand, within Dsui_0084at 82.258 kb on + strand, within Dsui_0084at 82.258 kb on + strand, within Dsui_0084at 82.266 kb on - strand, within Dsui_0084at 82.299 kb on - strand, within Dsui_0084at 82.306 kb on + strand, within Dsui_0084at 82.314 kb on - strand, within Dsui_0084at 82.315 kb on - strand, within Dsui_0084at 82.352 kb on + strand, within Dsui_0084at 82.387 kb on - strand, within Dsui_0084at 82.484 kb on + strand, within Dsui_0084at 82.493 kb on - strand, within Dsui_0084at 82.494 kb on + strand, within Dsui_0084at 82.499 kb on + strand, within Dsui_0084at 82.502 kb on - strand, within Dsui_0084at 82.533 kb on + strand, within Dsui_0084at 82.541 kb on - strand, within Dsui_0084at 82.605 kb on - strand, within Dsui_0084at 82.654 kb on - strand, within Dsui_0084at 82.654 kb on - strand, within Dsui_0084at 82.654 kb on - strand, within Dsui_0084at 82.689 kb on + strand, within Dsui_0084at 82.697 kb on - strand, within Dsui_0084at 82.697 kb on - strand, within Dsui_0084at 82.748 kb on - strand, within Dsui_0084at 82.782 kb on + strand, within Dsui_0084at 82.787 kb on - strand, within Dsui_0084at 82.789 kb on + strand, within Dsui_0084at 82.812 kb on + strand, within Dsui_0084at 82.816 kb on - strand, within Dsui_0084at 82.840 kb on - strand, within Dsui_0084at 82.910 kb on + strandat 82.927 kb on - strandat 82.937 kb on - strandat 82.937 kb on - strandat 82.945 kb on - strandat 82.968 kb on - strandat 83.002 kb on - strandat 83.008 kb on + strandat 83.034 kb on + strandat 83.116 kb on - strandat 83.133 kb on - strandat 83.150 kb on - strandat 83.168 kb on + strandat 83.168 kb on + strandat 83.168 kb on + strandat 83.168 kb on + strandat 83.168 kb on + strandat 83.168 kb on + strandat 83.168 kb on + strandat 83.168 kb on + strandat 83.168 kb on + strandat 83.176 kb on - strandat 83.176 kb on - strandat 83.176 kb on - strandat 83.176 kb on - strandat 83.176 kb on - strandat 83.176 kb on - strandat 83.176 kb on - strandat 83.176 kb on - strandat 83.202 kb on - strandat 83.263 kb on + strandat 83.290 kb on + strandat 83.298 kb on - strandat 83.298 kb on - strandat 83.298 kb on - strandat 83.298 kb on - strandat 83.303 kb on - strandat 83.356 kb on + strandat 83.356 kb on + strandat 83.371 kb on - strandat 83.371 kb on - strandat 83.405 kb on + strandat 83.407 kb on + strandat 83.407 kb on + strandat 83.413 kb on - strandat 83.413 kb on - strandat 83.415 kb on - strandat 83.415 kb on - strandat 83.415 kb on - strandat 83.426 kb on + strandat 83.535 kb on - strand, within Dsui_0085at 83.577 kb on - strand, within Dsui_0085at 83.607 kb on - strand, within Dsui_0085at 83.630 kb on - strand, within Dsui_0085at 83.654 kb on + strand, within Dsui_0085at 83.655 kb on - strand, within Dsui_0085at 83.659 kb on + strand, within Dsui_0085at 83.659 kb on + strand, within Dsui_0085at 83.665 kb on - strand, within Dsui_0085at 83.667 kb on - strand, within Dsui_0085at 83.747 kb on + strand, within Dsui_0085at 83.762 kb on + strand, within Dsui_0085at 83.773 kb on + strand, within Dsui_0085at 83.795 kb on + strand, within Dsui_0085at 83.796 kb on - strand, within Dsui_0085at 83.802 kb on + strand, within Dsui_0085at 83.804 kb on - strand, within Dsui_0085at 83.864 kb on - strand, within Dsui_0085at 83.885 kb on + strand, within Dsui_0085at 83.893 kb on + strand, within Dsui_0085at 83.893 kb on + strand, within Dsui_0085at 83.894 kb on - strand, within Dsui_0085at 83.895 kb on + strand, within Dsui_0085at 83.901 kb on - strand, within Dsui_0085at 83.916 kb on - strand, within Dsui_0085at 83.939 kb on + strand, within Dsui_0085at 83.939 kb on + strand, within Dsui_0085at 83.947 kb on - strand, within Dsui_0085at 83.947 kb on - strand, within Dsui_0085at 83.947 kb on - strand, within Dsui_0085at 83.947 kb on - strand, within Dsui_0085at 83.947 kb on - strand, within Dsui_0085at 83.947 kb on - strand, within Dsui_0085at 83.958 kb on + strandat 83.958 kb on + strand, within Dsui_0085at 83.964 kb on - strand, within Dsui_0085at 83.966 kb on - strand, within Dsui_0085at 84.009 kb on + strand, within Dsui_0085at 84.024 kb on + strand, within Dsui_0085at 84.024 kb on + strand, within Dsui_0085at 84.024 kb on + strandat 84.032 kb on - strand, within Dsui_0085at 84.032 kb on - strand, within Dsui_0085at 84.032 kb on - strand, within Dsui_0085at 84.032 kb on - strand, within Dsui_0085at 84.032 kb on - strand, within Dsui_0085

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Per-strain Table

Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
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80,295 + -3.2
80,298 - +0.0
80,344 - +0.6
80,346 + -2.4
80,346 + -1.1
80,353 - -1.3
80,354 - -0.4
80,354 - -1.1
80,413 + Dsui_0083 0.16 -1.0
80,422 + Dsui_0083 0.17 -0.7
80,459 - Dsui_0083 0.20 -0.7
80,470 + Dsui_0083 0.21 -2.3
80,472 + Dsui_0083 0.22 -1.4
80,472 - Dsui_0083 0.22 -0.6
80,534 - Dsui_0083 0.28 -0.2
80,550 - Dsui_0083 0.29 -1.2
80,561 + Dsui_0083 0.31 -1.7
80,615 + Dsui_0083 0.36 -1.0
80,628 - Dsui_0083 0.37 -0.6
80,628 - Dsui_0083 0.37 -1.3
80,630 + Dsui_0083 0.37 -3.0
80,630 + Dsui_0083 0.37 -1.0
80,642 + Dsui_0083 0.39 -1.6
80,642 + Dsui_0083 0.39 -0.8
80,664 + Dsui_0083 0.41 +0.3
80,690 + Dsui_0083 0.43 -1.3
80,708 - Dsui_0083 0.45 -2.6
80,730 - Dsui_0083 0.47 +0.1
80,845 + Dsui_0083 0.59 -1.3
80,860 - Dsui_0083 0.60 -1.1
80,863 + Dsui_0083 0.61 -0.3
80,863 + Dsui_0083 0.61 +0.3
80,871 - Dsui_0083 0.62 -0.6
80,887 + Dsui_0083 0.63 -2.4
80,888 - Dsui_0083 0.63 +1.5
80,931 - Dsui_0083 0.68 +1.5
80,976 + Dsui_0083 0.72 -0.3
80,976 + Dsui_0083 0.72 -1.4
80,979 - Dsui_0083 0.72 -0.3
80,984 - Dsui_0083 0.73 -3.3
80,984 - Dsui_0083 0.73 -0.8
80,984 - Dsui_0083 0.73 -0.3
80,984 - Dsui_0083 0.73 -0.1
80,984 - Dsui_0083 0.73 +0.5
80,986 + Dsui_0083 0.73 -1.3
81,010 + Dsui_0083 0.75 -3.2
81,010 + Dsui_0083 0.75 -2.2
81,033 + Dsui_0083 0.78 -0.3
81,166 + -1.5
81,172 + -1.3
81,174 - -0.5
81,174 - -0.1
81,251 + -1.5
81,290 - +1.4
81,322 - +0.9
81,374 - -0.9
81,392 + -0.9
81,395 + -2.7
81,403 - -1.5
81,490 - Dsui_0084 0.13 -0.8
81,490 - Dsui_0084 0.13 -3.1
81,492 - Dsui_0084 0.13 -2.4
81,492 - Dsui_0084 0.13 -0.8
81,583 - Dsui_0084 0.18 -1.3
81,712 - Dsui_0084 0.25 -0.9
81,765 + Dsui_0084 0.28 -1.8
81,799 + Dsui_0084 0.30 +0.3
81,817 + Dsui_0084 0.31 -3.7
81,825 - Dsui_0084 0.32 -0.3
81,859 - Dsui_0084 0.33 +0.1
81,893 + Dsui_0084 0.35 -3.1
81,976 + Dsui_0084 0.40 -0.9
81,998 + Dsui_0084 0.41 -1.7
82,012 - Dsui_0084 0.42 +0.2
82,115 + Dsui_0084 0.48 -0.8
82,178 - Dsui_0084 0.51 -1.7
82,183 - Dsui_0084 0.52 -3.2
82,188 + Dsui_0084 0.52 -4.2
82,207 + Dsui_0084 0.53 -0.3
82,258 + Dsui_0084 0.56 -1.3
82,258 + Dsui_0084 0.56 -1.0
82,266 - Dsui_0084 0.56 -1.8
82,299 - Dsui_0084 0.58 -3.9
82,306 + Dsui_0084 0.59 -5.3
82,314 - Dsui_0084 0.59 -1.8
82,315 - Dsui_0084 0.59 -2.8
82,352 + Dsui_0084 0.61 -2.4
82,387 - Dsui_0084 0.63 -2.0
82,484 + Dsui_0084 0.69 -2.5
82,493 - Dsui_0084 0.69 -3.0
82,494 + Dsui_0084 0.69 -3.1
82,499 + Dsui_0084 0.69 -5.2
82,502 - Dsui_0084 0.70 -2.1
82,533 + Dsui_0084 0.71 -2.4
82,541 - Dsui_0084 0.72 -1.6
82,605 - Dsui_0084 0.75 -0.7
82,654 - Dsui_0084 0.78 -0.5
82,654 - Dsui_0084 0.78 -3.0
82,654 - Dsui_0084 0.78 -1.9
82,689 + Dsui_0084 0.80 -1.2
82,697 - Dsui_0084 0.81 -2.1
82,697 - Dsui_0084 0.81 -0.8
82,748 - Dsui_0084 0.84 +1.1
82,782 + Dsui_0084 0.85 -2.6
82,787 - Dsui_0084 0.86 +1.9
82,789 + Dsui_0084 0.86 -1.2
82,812 + Dsui_0084 0.87 -2.4
82,816 - Dsui_0084 0.87 -2.7
82,840 - Dsui_0084 0.89 -2.1
82,910 + -0.9
82,927 - -1.8
82,937 - -1.3
82,937 - +0.2
82,945 - -2.9
82,968 - -1.7
83,002 - -1.9
83,008 + -1.9
83,034 + -1.0
83,116 - +1.1
83,133 - +1.5
83,150 - +1.3
83,168 + -1.1
83,168 + -2.4
83,168 + +0.1
83,168 + -0.1
83,168 + -0.1
83,168 + +0.2
83,168 + -0.0
83,168 + +1.6
83,168 + +2.4
83,176 - +0.6
83,176 - +0.8
83,176 - +0.5
83,176 - +0.4
83,176 - +0.6
83,176 - +1.2
83,176 - +0.7
83,176 - +0.8
83,202 - +0.6
83,263 + +1.3
83,290 + +0.6
83,298 - +1.3
83,298 - +1.0
83,298 - +1.7
83,298 - +1.1
83,303 - +1.6
83,356 + -2.4
83,356 + -1.0
83,371 - -1.0
83,371 - +1.1
83,405 + -2.8
83,407 + -3.8
83,407 + -0.2
83,413 - +0.4
83,413 - -0.4
83,415 - +1.3
83,415 - -2.6
83,415 - -0.6
83,426 + -3.0
83,535 - Dsui_0085 0.17 -2.2
83,577 - Dsui_0085 0.21 -0.2
83,607 - Dsui_0085 0.24 -3.0
83,630 - Dsui_0085 0.26 -2.4
83,654 + Dsui_0085 0.28 -1.3
83,655 - Dsui_0085 0.28 -1.3
83,659 + Dsui_0085 0.29 -1.4
83,659 + Dsui_0085 0.29 -2.9
83,665 - Dsui_0085 0.29 -0.7
83,667 - Dsui_0085 0.30 -1.3
83,747 + Dsui_0085 0.37 -3.2
83,762 + Dsui_0085 0.38 +1.3
83,773 + Dsui_0085 0.39 -1.3
83,795 + Dsui_0085 0.41 -2.7
83,796 - Dsui_0085 0.41 -1.9
83,802 + Dsui_0085 0.42 -3.0
83,804 - Dsui_0085 0.42 -2.8
83,864 - Dsui_0085 0.48 -2.2
83,885 + Dsui_0085 0.50 -3.1
83,893 + Dsui_0085 0.50 -1.9
83,893 + Dsui_0085 0.50 -1.0
83,894 - Dsui_0085 0.50 -2.5
83,895 + Dsui_0085 0.50 -1.3
83,901 - Dsui_0085 0.51 -3.6
83,916 - Dsui_0085 0.52 -2.6
83,939 + Dsui_0085 0.54 -2.2
83,939 + Dsui_0085 0.54 -1.3
83,947 - Dsui_0085 0.55 -3.9
83,947 - Dsui_0085 0.55 -1.7
83,947 - Dsui_0085 0.55 -5.4
83,947 - Dsui_0085 0.55 -2.2
83,947 - Dsui_0085 0.55 -3.6
83,947 - Dsui_0085 0.55 -1.3
83,958 + +1.3
83,958 + Dsui_0085 0.56 -3.0
83,964 - Dsui_0085 0.57 -3.3
83,966 - Dsui_0085 0.57 -3.0
84,009 + Dsui_0085 0.61 -2.5
84,024 + Dsui_0085 0.62 -2.5
84,024 + Dsui_0085 0.62 -1.3
84,024 + -0.7
84,032 - Dsui_0085 0.63 -2.6
84,032 - Dsui_0085 0.63 -2.2
84,032 - Dsui_0085 0.63 -2.9
84,032 - Dsui_0085 0.63 -4.9
84,032 - Dsui_0085 0.63 -2.5

Or see this region's nucleotide sequence