Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19285

Experiment: ICP3_phage_0.41_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19275 and CSW01_19280 overlap by 4 nucleotidesCSW01_19280 and CSW01_19285 are separated by 35 nucleotidesCSW01_19285 and CSW01_19290 are separated by 0 nucleotides CSW01_19275: CSW01_19275 - amino acid ABC transporter ATP-binding protein, at 986,068 to 986,787 _19275 CSW01_19280: CSW01_19280 - amino acid ABC transporter permease, at 986,784 to 987,584 _19280 CSW01_19285: CSW01_19285 - amino acid ABC transporter substrate-binding protein, at 987,620 to 988,456 _19285 CSW01_19290: CSW01_19290 - amino acid ABC transporter permease, at 988,457 to 989,353 _19290 Position (kb) 987 988 989Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 986.620 kb on + strand, within CSW01_19275at 986.620 kb on + strand, within CSW01_19275at 986.628 kb on - strand, within CSW01_19275at 986.628 kb on - strand, within CSW01_19275at 986.628 kb on - strand, within CSW01_19275at 986.628 kb on - strand, within CSW01_19275at 986.655 kb on - strand, within CSW01_19275at 986.716 kb on + strandat 986.717 kb on - strandat 986.888 kb on + strand, within CSW01_19280at 986.888 kb on + strand, within CSW01_19280at 986.896 kb on - strand, within CSW01_19280at 986.896 kb on - strand, within CSW01_19280at 986.896 kb on - strand, within CSW01_19280at 987.019 kb on - strand, within CSW01_19280at 987.038 kb on - strand, within CSW01_19280at 987.078 kb on + strand, within CSW01_19280at 987.086 kb on - strand, within CSW01_19280at 987.113 kb on - strand, within CSW01_19280at 987.148 kb on - strand, within CSW01_19280at 987.199 kb on + strand, within CSW01_19280at 987.199 kb on + strand, within CSW01_19280at 987.209 kb on + strand, within CSW01_19280at 987.209 kb on + strand, within CSW01_19280at 987.209 kb on + strand, within CSW01_19280at 987.209 kb on + strand, within CSW01_19280at 987.209 kb on + strand, within CSW01_19280at 987.209 kb on + strand, within CSW01_19280at 987.217 kb on - strand, within CSW01_19280at 987.217 kb on - strand, within CSW01_19280at 987.217 kb on - strand, within CSW01_19280at 987.217 kb on - strand, within CSW01_19280at 987.217 kb on - strand, within CSW01_19280at 987.217 kb on - strand, within CSW01_19280at 987.217 kb on - strand, within CSW01_19280at 987.217 kb on - strand, within CSW01_19280at 987.226 kb on + strand, within CSW01_19280at 987.246 kb on + strand, within CSW01_19280at 987.246 kb on + strand, within CSW01_19280at 987.246 kb on + strand, within CSW01_19280at 987.246 kb on + strand, within CSW01_19280at 987.264 kb on - strand, within CSW01_19280at 987.275 kb on - strand, within CSW01_19280at 987.289 kb on + strand, within CSW01_19280at 987.289 kb on + strand, within CSW01_19280at 987.500 kb on + strand, within CSW01_19280at 987.517 kb on - strandat 987.517 kb on - strandat 987.538 kb on - strandat 987.549 kb on + strandat 987.558 kb on - strandat 987.644 kb on + strandat 987.735 kb on + strand, within CSW01_19285at 987.745 kb on + strand, within CSW01_19285at 987.753 kb on - strand, within CSW01_19285at 987.795 kb on + strand, within CSW01_19285at 987.957 kb on + strand, within CSW01_19285at 988.011 kb on - strand, within CSW01_19285at 988.245 kb on + strand, within CSW01_19285at 988.253 kb on - strand, within CSW01_19285at 988.287 kb on - strand, within CSW01_19285at 988.376 kb on + strandat 988.549 kb on + strand, within CSW01_19290at 988.565 kb on + strand, within CSW01_19290at 988.666 kb on - strand, within CSW01_19290at 988.705 kb on - strand, within CSW01_19290at 988.709 kb on + strand, within CSW01_19290at 988.717 kb on - strand, within CSW01_19290at 988.748 kb on - strand, within CSW01_19290at 988.813 kb on - strand, within CSW01_19290at 988.850 kb on - strand, within CSW01_19290at 988.895 kb on + strand, within CSW01_19290at 988.914 kb on + strand, within CSW01_19290at 988.924 kb on + strand, within CSW01_19290at 988.981 kb on + strand, within CSW01_19290at 988.989 kb on - strand, within CSW01_19290at 989.146 kb on + strand, within CSW01_19290at 989.148 kb on + strand, within CSW01_19290at 989.156 kb on - strand, within CSW01_19290at 989.211 kb on - strand, within CSW01_19290at 989.297 kb on - strandat 989.297 kb on - strandat 989.306 kb on - strandat 989.307 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep2
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986,620 + CSW01_19275 0.77 -0.3
986,620 + CSW01_19275 0.77 -1.6
986,628 - CSW01_19275 0.78 +0.2
986,628 - CSW01_19275 0.78 +1.0
986,628 - CSW01_19275 0.78 -0.1
986,628 - CSW01_19275 0.78 -2.2
986,655 - CSW01_19275 0.82 -1.6
986,716 + -2.5
986,717 - -1.7
986,888 + CSW01_19280 0.13 +1.4
986,888 + CSW01_19280 0.13 +0.5
986,896 - CSW01_19280 0.14 -1.8
986,896 - CSW01_19280 0.14 +0.4
986,896 - CSW01_19280 0.14 +2.1
987,019 - CSW01_19280 0.29 +1.0
987,038 - CSW01_19280 0.32 -0.8
987,078 + CSW01_19280 0.37 +1.3
987,086 - CSW01_19280 0.38 -2.8
987,113 - CSW01_19280 0.41 +1.3
987,148 - CSW01_19280 0.45 -0.1
987,199 + CSW01_19280 0.52 -2.3
987,199 + CSW01_19280 0.52 +0.1
987,209 + CSW01_19280 0.53 +0.0
987,209 + CSW01_19280 0.53 +1.3
987,209 + CSW01_19280 0.53 -3.1
987,209 + CSW01_19280 0.53 -2.7
987,209 + CSW01_19280 0.53 -0.2
987,209 + CSW01_19280 0.53 +0.1
987,217 - CSW01_19280 0.54 -0.2
987,217 - CSW01_19280 0.54 -3.0
987,217 - CSW01_19280 0.54 +1.2
987,217 - CSW01_19280 0.54 +1.2
987,217 - CSW01_19280 0.54 -1.8
987,217 - CSW01_19280 0.54 -0.7
987,217 - CSW01_19280 0.54 -0.8
987,217 - CSW01_19280 0.54 +1.3
987,226 + CSW01_19280 0.55 +1.0
987,246 + CSW01_19280 0.58 -1.7
987,246 + CSW01_19280 0.58 -0.3
987,246 + CSW01_19280 0.58 +1.4
987,246 + CSW01_19280 0.58 +0.0
987,264 - CSW01_19280 0.60 -4.2
987,275 - CSW01_19280 0.61 +0.3
987,289 + CSW01_19280 0.63 -1.9
987,289 + CSW01_19280 0.63 -3.4
987,500 + CSW01_19280 0.89 -1.6
987,517 - -1.4
987,517 - -1.8
987,538 - -0.3
987,549 + -3.5
987,558 - +0.6
987,644 + -3.3
987,735 + CSW01_19285 0.14 -0.6
987,745 + CSW01_19285 0.15 -1.4
987,753 - CSW01_19285 0.16 +0.4
987,795 + CSW01_19285 0.21 +0.4
987,957 + CSW01_19285 0.40 -3.1
988,011 - CSW01_19285 0.47 -1.4
988,245 + CSW01_19285 0.75 +1.6
988,253 - CSW01_19285 0.76 +0.2
988,287 - CSW01_19285 0.80 -0.7
988,376 + +0.8
988,549 + CSW01_19290 0.10 +0.0
988,565 + CSW01_19290 0.12 -1.7
988,666 - CSW01_19290 0.23 +0.7
988,705 - CSW01_19290 0.28 +2.3
988,709 + CSW01_19290 0.28 -0.0
988,717 - CSW01_19290 0.29 +0.7
988,748 - CSW01_19290 0.32 +2.8
988,813 - CSW01_19290 0.40 +1.5
988,850 - CSW01_19290 0.44 +0.8
988,895 + CSW01_19290 0.49 -1.8
988,914 + CSW01_19290 0.51 -1.1
988,924 + CSW01_19290 0.52 -3.1
988,981 + CSW01_19290 0.58 -1.5
988,989 - CSW01_19290 0.59 -0.2
989,146 + CSW01_19290 0.77 -2.6
989,148 + CSW01_19290 0.77 -1.9
989,156 - CSW01_19290 0.78 +2.5
989,211 - CSW01_19290 0.84 -0.7
989,297 - +1.1
989,297 - -1.1
989,306 - -0.1
989,307 - -2.1

Or see this region's nucleotide sequence