Experiment: ICP3_phage_0.41_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_19245 and CSW01_19250 are separated by 114 nucleotides CSW01_19250 and CSW01_19255 are separated by 267 nucleotides CSW01_19255 and CSW01_19260 are separated by 8 nucleotides
CSW01_19245: CSW01_19245 - methyl-accepting chemotaxis protein, at 978,383 to 980,014
_19245
CSW01_19250: CSW01_19250 - hypothetical protein, at 980,129 to 980,536
_19250
CSW01_19255: CSW01_19255 - carbohydrate ABC transporter substrate-binding protein, at 980,804 to 982,180
_19255
CSW01_19260: CSW01_19260 - methyl-accepting chemotaxis protein, at 982,189 to 984,168
_19260
Position (kb) 980
981
982
983 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 979.877 kb on - strand at 979.930 kb on - strand at 979.933 kb on + strand at 979.941 kb on - strand at 979.943 kb on + strand at 979.943 kb on + strand at 979.943 kb on + strand at 979.951 kb on - strand at 979.953 kb on + strand at 980.002 kb on - strand at 980.237 kb on - strand, within CSW01_19250 at 980.369 kb on + strand, within CSW01_19250 at 980.369 kb on + strand, within CSW01_19250 at 980.410 kb on + strand, within CSW01_19250 at 980.554 kb on + strand at 980.564 kb on + strand at 980.642 kb on + strand at 980.657 kb on - strand at 980.708 kb on - strand at 980.708 kb on - strand at 980.738 kb on + strand at 980.739 kb on - strand at 980.772 kb on + strand at 980.772 kb on + strand at 980.780 kb on - strand at 980.815 kb on + strand at 980.825 kb on - strand at 980.827 kb on + strand at 980.904 kb on + strand at 980.917 kb on + strand at 980.927 kb on - strand at 980.935 kb on - strand at 980.979 kb on - strand, within CSW01_19255 at 981.148 kb on + strand, within CSW01_19255 at 981.153 kb on + strand, within CSW01_19255 at 981.161 kb on - strand, within CSW01_19255 at 981.161 kb on - strand, within CSW01_19255 at 981.171 kb on - strand, within CSW01_19255 at 981.171 kb on - strand, within CSW01_19255 at 981.210 kb on + strand, within CSW01_19255 at 981.210 kb on + strand, within CSW01_19255 at 981.218 kb on - strand, within CSW01_19255 at 981.218 kb on - strand, within CSW01_19255 at 981.341 kb on - strand, within CSW01_19255 at 981.523 kb on + strand, within CSW01_19255 at 981.531 kb on - strand, within CSW01_19255 at 981.668 kb on + strand, within CSW01_19255 at 981.809 kb on + strand, within CSW01_19255 at 981.817 kb on - strand, within CSW01_19255 at 981.903 kb on + strand, within CSW01_19255 at 982.022 kb on - strand, within CSW01_19255 at 982.022 kb on - strand, within CSW01_19255 at 982.022 kb on - strand, within CSW01_19255 at 982.138 kb on - strand at 982.158 kb on + strand at 982.185 kb on - strand at 982.193 kb on + strand at 982.193 kb on + strand at 982.201 kb on - strand at 982.201 kb on - strand at 982.201 kb on - strand at 982.320 kb on + strand at 982.548 kb on + strand, within CSW01_19260 at 982.556 kb on - strand, within CSW01_19260 at 982.686 kb on + strand, within CSW01_19260 at 982.733 kb on - strand, within CSW01_19260 at 982.733 kb on - strand, within CSW01_19260 at 982.781 kb on - strand, within CSW01_19260 at 982.904 kb on - strand, within CSW01_19260 at 982.966 kb on + strand, within CSW01_19260 at 982.966 kb on + strand, within CSW01_19260 at 982.974 kb on - strand, within CSW01_19260 at 982.988 kb on + strand, within CSW01_19260 at 983.091 kb on + strand, within CSW01_19260 at 983.099 kb on - strand, within CSW01_19260 at 983.122 kb on + strand, within CSW01_19260
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep2 remove 979,877 - -0.7 979,930 - +1.1 979,933 + -3.1 979,941 - -2.2 979,943 + -1.9 979,943 + -3.2 979,943 + -2.7 979,951 - +0.6 979,953 + +0.6 980,002 - +0.8 980,237 - CSW01_19250 0.26 +3.3 980,369 + CSW01_19250 0.59 -2.1 980,369 + CSW01_19250 0.59 +0.5 980,410 + CSW01_19250 0.69 -0.6 980,554 + -2.2 980,564 + -3.3 980,642 + +1.1 980,657 - -0.2 980,708 - +0.3 980,708 - +0.0 980,738 + -2.6 980,739 - +0.5 980,772 + +1.4 980,772 + +1.6 980,780 - -1.4 980,815 + +0.9 980,825 - +0.0 980,827 + -1.4 980,904 + +0.8 980,917 + +0.2 980,927 - -1.2 980,935 - -0.5 980,979 - CSW01_19255 0.13 +1.4 981,148 + CSW01_19255 0.25 +1.9 981,153 + CSW01_19255 0.25 +0.9 981,161 - CSW01_19255 0.26 +0.1 981,161 - CSW01_19255 0.26 -2.2 981,171 - CSW01_19255 0.27 -0.0 981,171 - CSW01_19255 0.27 -1.7 981,210 + CSW01_19255 0.29 +0.3 981,210 + CSW01_19255 0.29 -0.6 981,218 - CSW01_19255 0.30 +0.1 981,218 - CSW01_19255 0.30 +1.5 981,341 - CSW01_19255 0.39 +0.2 981,523 + CSW01_19255 0.52 -0.8 981,531 - CSW01_19255 0.53 -1.3 981,668 + CSW01_19255 0.63 +0.3 981,809 + CSW01_19255 0.73 +0.7 981,817 - CSW01_19255 0.74 +0.6 981,903 + CSW01_19255 0.80 +1.5 982,022 - CSW01_19255 0.88 -2.2 982,022 - CSW01_19255 0.88 +0.2 982,022 - CSW01_19255 0.88 +1.0 982,138 - -3.7 982,158 + -1.7 982,185 - +0.5 982,193 + +1.3 982,193 + +1.2 982,201 - -0.6 982,201 - +2.2 982,201 - -0.1 982,320 + -0.5 982,548 + CSW01_19260 0.18 +0.5 982,556 - CSW01_19260 0.19 +0.2 982,686 + CSW01_19260 0.25 +0.4 982,733 - CSW01_19260 0.27 +0.5 982,733 - CSW01_19260 0.27 +0.2 982,781 - CSW01_19260 0.30 +0.1 982,904 - CSW01_19260 0.36 -0.1 982,966 + CSW01_19260 0.39 +2.1 982,966 + CSW01_19260 0.39 -0.9 982,974 - CSW01_19260 0.40 -1.7 982,988 + CSW01_19260 0.40 -3.8 983,091 + CSW01_19260 0.46 -0.8 983,099 - CSW01_19260 0.46 -0.4 983,122 + CSW01_19260 0.47 -0.2
Or see this region's nucleotide sequence