Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19090

Experiment: ICP3_phage_0.41_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19085 and CSW01_19090 are separated by 356 nucleotidesCSW01_19090 and CSW01_19095 are separated by 130 nucleotidesCSW01_19095 and CSW01_19100 are separated by 89 nucleotides CSW01_19085: CSW01_19085 - amidinotransferase, at 946,508 to 947,488 _19085 CSW01_19090: CSW01_19090 - ABC transporter ATP-binding protein, at 947,845 to 949,704 _19090 CSW01_19095: CSW01_19095 - DUF445 domain-containing protein, at 949,835 to 950,560 _19095 CSW01_19100: CSW01_19100 - alkene reductase, at 950,650 to 951,693 _19100 Position (kb) 947 948 949 950Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 946.948 kb on - strand, within CSW01_19085at 946.948 kb on - strand, within CSW01_19085at 946.956 kb on + strand, within CSW01_19085at 946.974 kb on - strand, within CSW01_19085at 947.022 kb on - strand, within CSW01_19085at 947.064 kb on - strand, within CSW01_19085at 947.184 kb on + strand, within CSW01_19085at 947.184 kb on + strand, within CSW01_19085at 947.233 kb on - strand, within CSW01_19085at 947.238 kb on - strand, within CSW01_19085at 947.371 kb on - strand, within CSW01_19085at 947.380 kb on + strand, within CSW01_19085at 947.439 kb on - strandat 947.593 kb on + strandat 947.707 kb on - strandat 947.715 kb on + strandat 947.723 kb on - strandat 947.743 kb on + strandat 947.743 kb on + strandat 947.743 kb on + strandat 947.743 kb on + strandat 947.743 kb on + strandat 947.743 kb on + strandat 947.751 kb on - strandat 947.751 kb on - strandat 947.751 kb on - strandat 947.751 kb on - strandat 947.751 kb on - strandat 947.876 kb on - strandat 947.893 kb on + strandat 947.895 kb on - strandat 947.912 kb on - strandat 947.971 kb on + strandat 947.971 kb on + strandat 947.979 kb on - strandat 948.020 kb on - strandat 948.097 kb on + strand, within CSW01_19090at 948.105 kb on - strand, within CSW01_19090at 948.105 kb on - strand, within CSW01_19090at 948.159 kb on - strand, within CSW01_19090at 948.334 kb on - strand, within CSW01_19090at 948.484 kb on + strand, within CSW01_19090at 948.534 kb on + strand, within CSW01_19090at 948.534 kb on + strand, within CSW01_19090at 948.542 kb on + strand, within CSW01_19090at 948.542 kb on + strand, within CSW01_19090at 948.542 kb on + strand, within CSW01_19090at 948.542 kb on - strand, within CSW01_19090at 948.542 kb on - strand, within CSW01_19090at 948.550 kb on - strand, within CSW01_19090at 948.692 kb on + strand, within CSW01_19090at 948.692 kb on + strand, within CSW01_19090at 948.761 kb on + strand, within CSW01_19090at 948.769 kb on - strand, within CSW01_19090at 948.769 kb on - strand, within CSW01_19090at 948.769 kb on - strand, within CSW01_19090at 948.861 kb on + strand, within CSW01_19090at 948.861 kb on + strand, within CSW01_19090at 948.909 kb on - strand, within CSW01_19090at 948.922 kb on + strand, within CSW01_19090at 948.936 kb on - strand, within CSW01_19090at 949.178 kb on - strand, within CSW01_19090at 949.237 kb on - strand, within CSW01_19090at 949.237 kb on - strand, within CSW01_19090at 949.245 kb on + strand, within CSW01_19090at 949.263 kb on + strand, within CSW01_19090at 949.264 kb on + strand, within CSW01_19090at 949.281 kb on - strand, within CSW01_19090at 949.287 kb on + strand, within CSW01_19090at 949.313 kb on - strand, within CSW01_19090at 949.395 kb on + strand, within CSW01_19090at 949.403 kb on - strand, within CSW01_19090at 949.403 kb on - strand, within CSW01_19090at 949.511 kb on + strand, within CSW01_19090at 949.525 kb on + strandat 949.628 kb on - strandat 949.640 kb on - strandat 949.640 kb on - strandat 949.642 kb on + strandat 949.722 kb on - strandat 949.722 kb on - strandat 949.727 kb on - strandat 949.727 kb on - strandat 949.727 kb on - strandat 949.868 kb on - strandat 949.897 kb on + strandat 949.986 kb on + strand, within CSW01_19095at 950.004 kb on - strand, within CSW01_19095at 950.023 kb on - strand, within CSW01_19095at 950.201 kb on - strand, within CSW01_19095at 950.287 kb on + strand, within CSW01_19095at 950.302 kb on + strand, within CSW01_19095at 950.327 kb on + strand, within CSW01_19095at 950.371 kb on - strand, within CSW01_19095at 950.415 kb on + strand, within CSW01_19095

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep2
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946,948 - CSW01_19085 0.45 -2.9
946,948 - CSW01_19085 0.45 -0.1
946,956 + CSW01_19085 0.46 -1.3
946,974 - CSW01_19085 0.48 -0.1
947,022 - CSW01_19085 0.52 -1.9
947,064 - CSW01_19085 0.57 -2.8
947,184 + CSW01_19085 0.69 -1.8
947,184 + CSW01_19085 0.69 +1.5
947,233 - CSW01_19085 0.74 +0.7
947,238 - CSW01_19085 0.74 +0.1
947,371 - CSW01_19085 0.88 +1.7
947,380 + CSW01_19085 0.89 +0.2
947,439 - -1.8
947,593 + +0.2
947,707 - +0.8
947,715 + +0.4
947,723 - -1.7
947,743 + +0.8
947,743 + -2.6
947,743 + +2.2
947,743 + +1.0
947,743 + +0.1
947,743 + +0.6
947,751 - +1.2
947,751 - -1.1
947,751 - +0.4
947,751 - -0.2
947,751 - +0.4
947,876 - +1.9
947,893 + +1.0
947,895 - +0.0
947,912 - +1.1
947,971 + -1.1
947,971 + -0.2
947,979 - +1.3
948,020 - +0.1
948,097 + CSW01_19090 0.14 +1.8
948,105 - CSW01_19090 0.14 +1.1
948,105 - CSW01_19090 0.14 +1.5
948,159 - CSW01_19090 0.17 -2.2
948,334 - CSW01_19090 0.26 -2.8
948,484 + CSW01_19090 0.34 -0.2
948,534 + CSW01_19090 0.37 +0.3
948,534 + CSW01_19090 0.37 -2.2
948,542 + CSW01_19090 0.37 -3.2
948,542 + CSW01_19090 0.37 -2.2
948,542 + CSW01_19090 0.37 -1.8
948,542 - CSW01_19090 0.37 -2.9
948,542 - CSW01_19090 0.37 +0.5
948,550 - CSW01_19090 0.38 -0.8
948,692 + CSW01_19090 0.46 -1.1
948,692 + CSW01_19090 0.46 +0.5
948,761 + CSW01_19090 0.49 -1.9
948,769 - CSW01_19090 0.50 +1.2
948,769 - CSW01_19090 0.50 +1.5
948,769 - CSW01_19090 0.50 +2.2
948,861 + CSW01_19090 0.55 -0.0
948,861 + CSW01_19090 0.55 -1.4
948,909 - CSW01_19090 0.57 +1.2
948,922 + CSW01_19090 0.58 +0.4
948,936 - CSW01_19090 0.59 +0.6
949,178 - CSW01_19090 0.72 -2.1
949,237 - CSW01_19090 0.75 +0.4
949,237 - CSW01_19090 0.75 +0.2
949,245 + CSW01_19090 0.75 +0.0
949,263 + CSW01_19090 0.76 +0.0
949,264 + CSW01_19090 0.76 -4.2
949,281 - CSW01_19090 0.77 -0.7
949,287 + CSW01_19090 0.78 +0.5
949,313 - CSW01_19090 0.79 +2.4
949,395 + CSW01_19090 0.83 +2.0
949,403 - CSW01_19090 0.84 -3.1
949,403 - CSW01_19090 0.84 -0.8
949,511 + CSW01_19090 0.90 +0.8
949,525 + +0.5
949,628 - -1.0
949,640 - -1.2
949,640 - -2.1
949,642 + +1.8
949,722 - +1.8
949,722 - -0.6
949,727 - -2.7
949,727 - -1.8
949,727 - -1.2
949,868 - -0.4
949,897 + +0.5
949,986 + CSW01_19095 0.21 -1.6
950,004 - CSW01_19095 0.23 +1.4
950,023 - CSW01_19095 0.26 -0.4
950,201 - CSW01_19095 0.50 +1.2
950,287 + CSW01_19095 0.62 +0.8
950,302 + CSW01_19095 0.64 +1.4
950,327 + CSW01_19095 0.68 +1.5
950,371 - CSW01_19095 0.74 +1.3
950,415 + CSW01_19095 0.80 +3.6

Or see this region's nucleotide sequence