Experiment: ICP3_phage_0.41_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18675 and CSW01_18680 are separated by 301 nucleotides CSW01_18680 and CSW01_18685 are separated by 24 nucleotides CSW01_18685 and CSW01_18690 are separated by 23 nucleotides
CSW01_18675: CSW01_18675 - methyl-accepting chemotaxis protein, at 859,133 to 860,869
_18675
CSW01_18680: CSW01_18680 - heme utilization protein HutZ, at 861,171 to 861,701
_18680
CSW01_18685: CSW01_18685 - heme utilization cystosolic carrier protein HutX, at 861,726 to 862,229
_18685
CSW01_18690: CSW01_18690 - heme anaerobic degradation radical SAM methyltransferase ChuW/HutW, at 862,253 to 863,620
_18690
Position (kb) 861
862 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 860.233 kb on + strand, within CSW01_18675 at 860.303 kb on + strand, within CSW01_18675 at 860.387 kb on + strand, within CSW01_18675 at 860.476 kb on - strand, within CSW01_18675 at 860.552 kb on + strand, within CSW01_18675 at 860.683 kb on - strand, within CSW01_18675 at 860.727 kb on - strand at 860.773 kb on + strand at 860.778 kb on + strand at 861.168 kb on + strand at 861.273 kb on + strand, within CSW01_18680 at 861.297 kb on - strand, within CSW01_18680 at 861.306 kb on + strand, within CSW01_18680 at 861.518 kb on - strand, within CSW01_18680 at 861.591 kb on + strand, within CSW01_18680 at 861.638 kb on - strand, within CSW01_18680 at 861.667 kb on - strand at 861.751 kb on + strand at 861.751 kb on + strand at 861.751 kb on + strand at 861.751 kb on + strand at 861.751 kb on + strand at 861.751 kb on + strand at 861.759 kb on - strand at 861.759 kb on - strand at 862.131 kb on + strand, within CSW01_18685 at 862.300 kb on + strand at 862.302 kb on + strand at 862.305 kb on - strand at 862.305 kb on - strand at 862.320 kb on - strand at 862.351 kb on + strand at 862.359 kb on - strand at 862.361 kb on + strand at 862.375 kb on + strand at 862.411 kb on + strand, within CSW01_18690 at 862.411 kb on + strand, within CSW01_18690 at 862.419 kb on - strand, within CSW01_18690 at 862.514 kb on + strand, within CSW01_18690 at 862.670 kb on - strand, within CSW01_18690 at 862.684 kb on - strand, within CSW01_18690
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep2 remove 860,233 + CSW01_18675 0.63 -1.5 860,303 + CSW01_18675 0.67 -0.5 860,387 + CSW01_18675 0.72 -2.7 860,476 - CSW01_18675 0.77 +0.3 860,552 + CSW01_18675 0.82 -0.0 860,683 - CSW01_18675 0.89 +0.2 860,727 - +0.6 860,773 + -2.3 860,778 + -3.0 861,168 + -3.7 861,273 + CSW01_18680 0.19 -1.7 861,297 - CSW01_18680 0.24 -1.3 861,306 + CSW01_18680 0.25 -0.6 861,518 - CSW01_18680 0.65 -0.3 861,591 + CSW01_18680 0.79 +0.0 861,638 - CSW01_18680 0.88 -2.5 861,667 - -4.6 861,751 + +0.6 861,751 + -3.4 861,751 + -0.4 861,751 + -0.5 861,751 + -0.8 861,751 + -1.0 861,759 - +0.5 861,759 - -2.0 862,131 + CSW01_18685 0.80 +0.6 862,300 + -0.1 862,302 + +0.2 862,305 - -0.5 862,305 - -1.2 862,320 - +1.7 862,351 + -1.3 862,359 - +1.2 862,361 + +1.4 862,375 + -1.5 862,411 + CSW01_18690 0.12 +1.2 862,411 + CSW01_18690 0.12 -0.2 862,419 - CSW01_18690 0.12 -1.5 862,514 + CSW01_18690 0.19 -2.8 862,670 - CSW01_18690 0.30 -0.8 862,684 - CSW01_18690 0.32 +1.4
Or see this region's nucleotide sequence