Experiment: ICP3_phage_0.41_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18370 and CSW01_18375 are separated by 42 nucleotides CSW01_18375 and CSW01_18380 are separated by 130 nucleotides
CSW01_18370: CSW01_18370 - L-methionine/branched-chain amino acid transporter, at 786,817 to 788,061
_18370
CSW01_18375: CSW01_18375 - GGDEF domain-containing protein, at 788,104 to 789,084
_18375
CSW01_18380: CSW01_18380 - type I secretion C-terminal target domain-containing protein, at 789,215 to 799,006
_18380
Position (kb) 788
789
790 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 787.126 kb on + strand, within CSW01_18370 at 787.153 kb on + strand, within CSW01_18370 at 787.153 kb on + strand, within CSW01_18370 at 787.153 kb on + strand, within CSW01_18370 at 787.155 kb on - strand, within CSW01_18370 at 787.168 kb on + strand, within CSW01_18370 at 787.346 kb on + strand, within CSW01_18370 at 787.420 kb on - strand, within CSW01_18370 at 787.542 kb on - strand, within CSW01_18370 at 787.556 kb on - strand, within CSW01_18370 at 787.592 kb on + strand, within CSW01_18370 at 787.594 kb on + strand, within CSW01_18370 at 787.594 kb on + strand, within CSW01_18370 at 787.621 kb on + strand, within CSW01_18370 at 787.621 kb on + strand, within CSW01_18370 at 787.767 kb on - strand, within CSW01_18370 at 787.795 kb on - strand, within CSW01_18370 at 787.961 kb on + strand at 787.969 kb on - strand at 787.969 kb on - strand at 787.988 kb on + strand at 787.996 kb on - strand at 787.996 kb on - strand at 788.056 kb on + strand at 788.056 kb on + strand at 788.064 kb on - strand at 788.064 kb on - strand at 788.169 kb on + strand at 788.172 kb on + strand at 788.172 kb on + strand at 788.172 kb on + strand at 788.172 kb on + strand at 788.172 kb on + strand at 788.172 kb on + strand at 788.172 kb on + strand at 788.180 kb on - strand at 788.180 kb on - strand at 788.223 kb on - strand, within CSW01_18375 at 788.257 kb on - strand, within CSW01_18375 at 788.267 kb on - strand, within CSW01_18375 at 788.370 kb on + strand, within CSW01_18375 at 788.494 kb on - strand, within CSW01_18375 at 788.539 kb on - strand, within CSW01_18375 at 788.539 kb on - strand, within CSW01_18375 at 788.605 kb on + strand, within CSW01_18375 at 788.739 kb on + strand, within CSW01_18375 at 788.746 kb on + strand, within CSW01_18375 at 788.747 kb on - strand, within CSW01_18375 at 788.948 kb on - strand, within CSW01_18375 at 788.956 kb on - strand, within CSW01_18375 at 789.339 kb on + strand at 789.405 kb on - strand at 789.426 kb on + strand at 789.451 kb on - strand at 789.471 kb on - strand at 789.471 kb on - strand at 789.542 kb on + strand at 789.617 kb on + strand at 789.617 kb on + strand at 789.617 kb on + strand at 789.617 kb on + strand at 789.625 kb on - strand at 789.625 kb on - strand at 789.799 kb on - strand at 789.801 kb on - strand at 789.812 kb on + strand at 789.815 kb on + strand at 789.820 kb on - strand at 789.820 kb on - strand at 789.830 kb on - strand at 789.859 kb on + strand at 789.859 kb on - strand at 789.867 kb on - strand at 789.917 kb on + strand at 789.917 kb on + strand at 789.917 kb on + strand at 789.917 kb on + strand at 789.917 kb on + strand at 789.925 kb on - strand at 789.925 kb on - strand at 789.925 kb on - strand at 789.925 kb on - strand at 789.925 kb on - strand at 789.991 kb on - strand at 790.018 kb on + strand at 790.020 kb on + strand at 790.025 kb on + strand at 790.043 kb on - strand at 790.043 kb on - strand at 790.048 kb on + strand at 790.056 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep2 remove 787,126 + CSW01_18370 0.25 -2.4 787,153 + CSW01_18370 0.27 -2.9 787,153 + CSW01_18370 0.27 -0.8 787,153 + CSW01_18370 0.27 +0.4 787,155 - CSW01_18370 0.27 +0.4 787,168 + CSW01_18370 0.28 -1.7 787,346 + CSW01_18370 0.42 +0.8 787,420 - CSW01_18370 0.48 +0.1 787,542 - CSW01_18370 0.58 +1.0 787,556 - CSW01_18370 0.59 +1.4 787,592 + CSW01_18370 0.62 -2.1 787,594 + CSW01_18370 0.62 -0.4 787,594 + CSW01_18370 0.62 -1.2 787,621 + CSW01_18370 0.65 +1.6 787,621 + CSW01_18370 0.65 -2.7 787,767 - CSW01_18370 0.76 -0.2 787,795 - CSW01_18370 0.79 -1.4 787,961 + -1.0 787,969 - +0.8 787,969 - -3.2 787,988 + -0.1 787,996 - +0.2 787,996 - -1.5 788,056 + +0.5 788,056 + -2.5 788,064 - +0.6 788,064 - +0.5 788,169 + +1.3 788,172 + +3.5 788,172 + -2.7 788,172 + -0.3 788,172 + +0.0 788,172 + +0.6 788,172 + +0.5 788,172 + +0.5 788,180 - -0.5 788,180 - +0.7 788,223 - CSW01_18375 0.12 -1.2 788,257 - CSW01_18375 0.16 -0.4 788,267 - CSW01_18375 0.17 -0.1 788,370 + CSW01_18375 0.27 -0.3 788,494 - CSW01_18375 0.40 -0.6 788,539 - CSW01_18375 0.44 +0.3 788,539 - CSW01_18375 0.44 -1.9 788,605 + CSW01_18375 0.51 -0.7 788,739 + CSW01_18375 0.65 -4.3 788,746 + CSW01_18375 0.65 +0.5 788,747 - CSW01_18375 0.66 -1.5 788,948 - CSW01_18375 0.86 +1.5 788,956 - CSW01_18375 0.87 -0.2 789,339 + +2.5 789,405 - -0.2 789,426 + -2.5 789,451 - +0.3 789,471 - +1.3 789,471 - -1.1 789,542 + -0.6 789,617 + -0.7 789,617 + +1.4 789,617 + -1.2 789,617 + +1.7 789,625 - -0.4 789,625 - +0.0 789,799 - -0.8 789,801 - -0.4 789,812 + +0.3 789,815 + -1.6 789,820 - -1.9 789,820 - -2.5 789,830 - +0.3 789,859 + -0.6 789,859 - -2.0 789,867 - +0.1 789,917 + +1.0 789,917 + -2.9 789,917 + +0.7 789,917 + +0.9 789,917 + -0.8 789,925 - +0.6 789,925 - +0.6 789,925 - +0.2 789,925 - -1.9 789,925 - +0.6 789,991 - +1.7 790,018 + -1.9 790,020 + -1.1 790,025 + +0.5 790,043 - -1.3 790,043 - +0.9 790,048 + -2.6 790,056 - +1.2
Or see this region's nucleotide sequence