Experiment: ICP3_phage_0.41_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18345 and CSW01_18350 are separated by 892 nucleotides CSW01_18350 and CSW01_18355 are separated by 655 nucleotides
CSW01_18345: CSW01_18345 - osmotically inducible protein OsmC, at 781,476 to 781,880
_18345
CSW01_18350: CSW01_18350 - cell division protein DedD, at 782,773 to 783,258
_18350
CSW01_18355: CSW01_18355 - aldehyde dehydrogenase, at 783,914 to 785,443
_18355
Position (kb) 782
783
784 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 781.853 kb on + strand at 782.029 kb on + strand at 782.062 kb on + strand at 782.067 kb on + strand at 782.070 kb on - strand at 782.220 kb on - strand at 782.237 kb on + strand at 782.285 kb on - strand at 782.548 kb on - strand at 782.597 kb on + strand at 782.597 kb on + strand at 782.605 kb on - strand at 782.605 kb on - strand at 782.665 kb on + strand at 782.673 kb on - strand at 782.686 kb on + strand at 782.704 kb on - strand at 782.713 kb on + strand at 782.743 kb on - strand at 782.831 kb on + strand, within CSW01_18350 at 782.858 kb on - strand, within CSW01_18350 at 782.868 kb on - strand, within CSW01_18350 at 783.088 kb on + strand, within CSW01_18350 at 783.279 kb on - strand at 783.304 kb on - strand at 783.434 kb on - strand at 783.484 kb on + strand at 783.484 kb on + strand at 783.492 kb on - strand at 783.492 kb on - strand at 783.492 kb on - strand at 783.579 kb on + strand at 783.589 kb on + strand at 783.597 kb on - strand at 783.617 kb on - strand at 783.779 kb on + strand at 783.779 kb on + strand at 783.784 kb on + strand at 783.787 kb on - strand at 783.792 kb on - strand at 783.817 kb on + strand at 783.822 kb on + strand at 783.829 kb on + strand at 783.856 kb on - strand at 783.906 kb on + strand at 783.914 kb on - strand at 783.914 kb on - strand at 784.051 kb on - strand at 784.110 kb on - strand, within CSW01_18355 at 784.140 kb on - strand, within CSW01_18355 at 784.156 kb on + strand, within CSW01_18355 at 784.164 kb on - strand, within CSW01_18355 at 784.164 kb on - strand, within CSW01_18355 at 784.164 kb on - strand, within CSW01_18355 at 784.185 kb on + strand, within CSW01_18355 at 784.214 kb on + strand, within CSW01_18355 at 784.214 kb on + strand, within CSW01_18355 at 784.214 kb on + strand, within CSW01_18355 at 784.222 kb on - strand, within CSW01_18355 at 784.234 kb on - strand, within CSW01_18355
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep2 remove 781,853 + -0.0 782,029 + +0.6 782,062 + -0.1 782,067 + +0.2 782,070 - +0.2 782,220 - -0.7 782,237 + +1.0 782,285 - -1.0 782,548 - +0.0 782,597 + -0.2 782,597 + -0.9 782,605 - -0.6 782,605 - -0.8 782,665 + +1.6 782,673 - +0.7 782,686 + +0.3 782,704 - +0.2 782,713 + -2.7 782,743 - -1.6 782,831 + CSW01_18350 0.12 -0.9 782,858 - CSW01_18350 0.17 -2.1 782,868 - CSW01_18350 0.20 -2.2 783,088 + CSW01_18350 0.65 -2.5 783,279 - -0.5 783,304 - +0.3 783,434 - +1.4 783,484 + -0.4 783,484 + +1.3 783,492 - -0.2 783,492 - -0.2 783,492 - +0.4 783,579 + -3.2 783,589 + -0.1 783,597 - +0.5 783,617 - +1.1 783,779 + +1.5 783,779 + +1.2 783,784 + +0.6 783,787 - +1.4 783,792 - +0.9 783,817 + +0.1 783,822 + -0.3 783,829 + +0.5 783,856 - +1.1 783,906 + -1.9 783,914 - -0.5 783,914 - -0.5 784,051 - +1.9 784,110 - CSW01_18355 0.13 +0.4 784,140 - CSW01_18355 0.15 +0.4 784,156 + CSW01_18355 0.16 -2.8 784,164 - CSW01_18355 0.16 +1.2 784,164 - CSW01_18355 0.16 -0.8 784,164 - CSW01_18355 0.16 +0.0 784,185 + CSW01_18355 0.18 -1.1 784,214 + CSW01_18355 0.20 -3.3 784,214 + CSW01_18355 0.20 -0.9 784,214 + CSW01_18355 0.20 -2.2 784,222 - CSW01_18355 0.20 -0.5 784,234 - CSW01_18355 0.21 -1.1
Or see this region's nucleotide sequence