Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18300

Experiment: ICP3_phage_0.41_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18295 and CSW01_18300 are separated by 102 nucleotidesCSW01_18300 and CSW01_18305 are separated by 1 nucleotidesCSW01_18305 and CSW01_18310 are separated by 55 nucleotidesCSW01_18310 and CSW01_18315 are separated by 62 nucleotides CSW01_18295: CSW01_18295 - acetoacetate--CoA ligase, at 771,967 to 773,917 _18295 CSW01_18300: CSW01_18300 - LysR family transcriptional regulator, at 774,020 to 774,994 _18300 CSW01_18305: CSW01_18305 - hypothetical protein, at 774,996 to 775,190 _18305 CSW01_18310: CSW01_18310 - hypothetical protein, at 775,246 to 775,431 _18310 CSW01_18315: CSW01_18315 - methyltransferase, at 775,494 to 776,126 _18315 Position (kb) 774 775Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 773.040 kb on + strand, within CSW01_18295at 773.097 kb on + strand, within CSW01_18295at 773.105 kb on - strand, within CSW01_18295at 773.144 kb on + strand, within CSW01_18295at 773.177 kb on + strand, within CSW01_18295at 773.184 kb on + strand, within CSW01_18295at 773.185 kb on - strand, within CSW01_18295at 773.189 kb on + strand, within CSW01_18295at 773.192 kb on - strand, within CSW01_18295at 773.192 kb on - strand, within CSW01_18295at 773.197 kb on - strand, within CSW01_18295at 773.478 kb on - strand, within CSW01_18295at 773.539 kb on + strand, within CSW01_18295at 773.574 kb on - strand, within CSW01_18295at 773.751 kb on - strandat 773.771 kb on - strandat 773.790 kb on - strandat 773.801 kb on - strandat 773.885 kb on + strandat 773.886 kb on - strandat 773.905 kb on + strandat 774.057 kb on + strandat 774.102 kb on - strandat 774.115 kb on + strandat 774.123 kb on - strand, within CSW01_18300at 774.150 kb on + strand, within CSW01_18300at 774.150 kb on + strand, within CSW01_18300at 774.150 kb on + strand, within CSW01_18300at 774.158 kb on - strand, within CSW01_18300at 774.158 kb on - strand, within CSW01_18300at 774.158 kb on - strand, within CSW01_18300at 774.158 kb on - strand, within CSW01_18300at 774.175 kb on + strand, within CSW01_18300at 774.177 kb on + strand, within CSW01_18300at 774.177 kb on + strand, within CSW01_18300at 774.177 kb on + strand, within CSW01_18300at 774.183 kb on - strand, within CSW01_18300at 774.226 kb on + strand, within CSW01_18300at 774.234 kb on - strand, within CSW01_18300at 774.276 kb on + strand, within CSW01_18300at 774.276 kb on + strand, within CSW01_18300at 774.284 kb on - strand, within CSW01_18300at 774.292 kb on - strand, within CSW01_18300at 774.319 kb on - strand, within CSW01_18300at 774.338 kb on - strand, within CSW01_18300at 774.410 kb on - strand, within CSW01_18300at 774.419 kb on + strand, within CSW01_18300at 774.450 kb on + strand, within CSW01_18300at 774.485 kb on - strand, within CSW01_18300at 774.553 kb on + strand, within CSW01_18300at 774.554 kb on + strand, within CSW01_18300at 774.562 kb on - strand, within CSW01_18300at 774.629 kb on - strand, within CSW01_18300at 774.629 kb on - strand, within CSW01_18300at 774.727 kb on + strand, within CSW01_18300at 774.749 kb on + strand, within CSW01_18300at 774.881 kb on + strand, within CSW01_18300at 774.896 kb on - strand, within CSW01_18300at 774.908 kb on + strandat 774.953 kb on + strandat 775.076 kb on + strand, within CSW01_18305at 775.393 kb on - strand, within CSW01_18310at 775.406 kb on + strand, within CSW01_18310at 775.547 kb on + strandat 775.581 kb on - strand, within CSW01_18315at 775.581 kb on - strand, within CSW01_18315at 775.585 kb on + strand, within CSW01_18315at 775.598 kb on - strand, within CSW01_18315at 775.600 kb on + strand, within CSW01_18315at 775.876 kb on - strand, within CSW01_18315at 775.886 kb on - strand, within CSW01_18315at 775.937 kb on - strand, within CSW01_18315

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep2
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773,040 + CSW01_18295 0.55 -1.4
773,097 + CSW01_18295 0.58 +0.5
773,105 - CSW01_18295 0.58 -2.2
773,144 + CSW01_18295 0.60 +1.2
773,177 + CSW01_18295 0.62 +0.3
773,184 + CSW01_18295 0.62 -0.6
773,185 - CSW01_18295 0.62 +1.9
773,189 + CSW01_18295 0.63 -1.4
773,192 - CSW01_18295 0.63 +0.6
773,192 - CSW01_18295 0.63 +0.5
773,197 - CSW01_18295 0.63 +1.1
773,478 - CSW01_18295 0.77 +0.5
773,539 + CSW01_18295 0.81 +0.4
773,574 - CSW01_18295 0.82 -2.4
773,751 - -0.9
773,771 - +0.7
773,790 - +1.0
773,801 - +0.0
773,885 + +0.3
773,886 - -3.1
773,905 + +1.4
774,057 + -0.2
774,102 - +0.8
774,115 + -0.2
774,123 - CSW01_18300 0.11 -1.2
774,150 + CSW01_18300 0.13 -0.2
774,150 + CSW01_18300 0.13 +2.2
774,150 + CSW01_18300 0.13 +1.5
774,158 - CSW01_18300 0.14 +0.5
774,158 - CSW01_18300 0.14 -0.9
774,158 - CSW01_18300 0.14 -0.1
774,158 - CSW01_18300 0.14 +1.1
774,175 + CSW01_18300 0.16 +0.5
774,177 + CSW01_18300 0.16 -0.5
774,177 + CSW01_18300 0.16 -0.2
774,177 + CSW01_18300 0.16 +1.3
774,183 - CSW01_18300 0.17 +0.6
774,226 + CSW01_18300 0.21 -1.6
774,234 - CSW01_18300 0.22 +0.6
774,276 + CSW01_18300 0.26 -0.6
774,276 + CSW01_18300 0.26 +1.7
774,284 - CSW01_18300 0.27 -1.4
774,292 - CSW01_18300 0.28 -0.1
774,319 - CSW01_18300 0.31 -0.7
774,338 - CSW01_18300 0.33 +1.3
774,410 - CSW01_18300 0.40 +0.3
774,419 + CSW01_18300 0.41 -0.2
774,450 + CSW01_18300 0.44 +0.7
774,485 - CSW01_18300 0.48 +0.3
774,553 + CSW01_18300 0.55 -4.0
774,554 + CSW01_18300 0.55 -2.6
774,562 - CSW01_18300 0.56 -0.7
774,629 - CSW01_18300 0.62 -3.6
774,629 - CSW01_18300 0.62 +0.3
774,727 + CSW01_18300 0.73 +0.6
774,749 + CSW01_18300 0.75 +1.0
774,881 + CSW01_18300 0.88 -2.1
774,896 - CSW01_18300 0.90 -0.1
774,908 + -2.1
774,953 + -1.9
775,076 + CSW01_18305 0.41 +1.2
775,393 - CSW01_18310 0.79 -2.9
775,406 + CSW01_18310 0.86 -0.7
775,547 + -1.3
775,581 - CSW01_18315 0.14 -2.0
775,581 - CSW01_18315 0.14 +0.1
775,585 + CSW01_18315 0.14 -2.5
775,598 - CSW01_18315 0.16 -0.9
775,600 + CSW01_18315 0.17 +1.6
775,876 - CSW01_18315 0.60 +0.6
775,886 - CSW01_18315 0.62 +1.3
775,937 - CSW01_18315 0.70 -0.6

Or see this region's nucleotide sequence