Experiment: ICP3_phage_0.41_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18145 and CSW01_18150 are separated by 237 nucleotides CSW01_18150 and CSW01_18155 are separated by 195 nucleotides CSW01_18155 and CSW01_18160 are separated by 138 nucleotides CSW01_18160 and CSW01_18165 are separated by 321 nucleotides
CSW01_18145: CSW01_18145 - resolvase, at 736,235 to 737,191
_18145
CSW01_18150: CSW01_18150 - transcription initiation factor TFIIIB, at 737,429 to 737,650
_18150
CSW01_18155: CSW01_18155 - HAD family hydrolase, at 737,846 to 738,526
_18155
CSW01_18160: CSW01_18160 - hypothetical protein, at 738,665 to 739,171
_18160
CSW01_18165: CSW01_18165 - hypothetical protein, at 739,493 to 739,975
_18165
Position (kb) 737
738
739 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 736.849 kb on - strand, within CSW01_18145 at 736.849 kb on - strand, within CSW01_18145 at 736.873 kb on + strand, within CSW01_18145 at 736.873 kb on + strand, within CSW01_18145 at 736.898 kb on + strand, within CSW01_18145 at 736.898 kb on + strand, within CSW01_18145 at 736.906 kb on - strand, within CSW01_18145 at 736.928 kb on + strand, within CSW01_18145 at 736.979 kb on - strand, within CSW01_18145 at 737.021 kb on + strand, within CSW01_18145 at 737.021 kb on + strand, within CSW01_18145 at 737.034 kb on - strand, within CSW01_18145 at 737.079 kb on + strand, within CSW01_18145 at 737.094 kb on + strand, within CSW01_18145 at 737.333 kb on + strand at 737.371 kb on + strand at 737.383 kb on + strand at 737.396 kb on - strand at 737.401 kb on - strand at 737.401 kb on - strand at 737.484 kb on - strand, within CSW01_18150 at 737.773 kb on + strand at 737.882 kb on - strand at 737.896 kb on + strand at 737.959 kb on + strand, within CSW01_18155 at 737.959 kb on + strand, within CSW01_18155 at 737.989 kb on - strand, within CSW01_18155 at 738.136 kb on + strand, within CSW01_18155 at 738.141 kb on + strand, within CSW01_18155 at 738.224 kb on - strand, within CSW01_18155 at 738.312 kb on - strand, within CSW01_18155 at 738.407 kb on + strand, within CSW01_18155 at 738.455 kb on + strand, within CSW01_18155 at 738.472 kb on + strand at 738.480 kb on - strand at 738.491 kb on + strand at 738.515 kb on + strand at 738.551 kb on - strand at 738.551 kb on - strand at 738.553 kb on + strand at 738.553 kb on + strand at 738.553 kb on + strand at 738.553 kb on + strand at 738.739 kb on - strand, within CSW01_18160 at 738.787 kb on + strand, within CSW01_18160 at 738.922 kb on + strand, within CSW01_18160 at 738.930 kb on - strand, within CSW01_18160 at 738.939 kb on + strand, within CSW01_18160 at 739.060 kb on - strand, within CSW01_18160 at 739.078 kb on + strand, within CSW01_18160 at 739.078 kb on + strand, within CSW01_18160 at 739.086 kb on - strand, within CSW01_18160 at 739.086 kb on - strand, within CSW01_18160 at 739.086 kb on - strand, within CSW01_18160 at 739.152 kb on + strand at 739.195 kb on + strand at 739.239 kb on + strand at 739.261 kb on + strand at 739.396 kb on - strand at 739.402 kb on + strand at 739.402 kb on + strand at 739.402 kb on + strand at 739.410 kb on - strand at 739.412 kb on + strand at 739.420 kb on - strand at 739.514 kb on + strand at 739.514 kb on + strand at 739.522 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep2 remove 736,849 - CSW01_18145 0.64 -0.3 736,849 - CSW01_18145 0.64 -0.7 736,873 + CSW01_18145 0.67 -3.1 736,873 + CSW01_18145 0.67 -2.7 736,898 + CSW01_18145 0.69 +1.9 736,898 + CSW01_18145 0.69 +0.4 736,906 - CSW01_18145 0.70 +0.7 736,928 + CSW01_18145 0.72 -0.7 736,979 - CSW01_18145 0.78 -1.1 737,021 + CSW01_18145 0.82 -2.1 737,021 + CSW01_18145 0.82 -2.9 737,034 - CSW01_18145 0.83 -1.8 737,079 + CSW01_18145 0.88 -2.3 737,094 + CSW01_18145 0.90 +0.2 737,333 + -0.3 737,371 + -1.0 737,383 + -1.0 737,396 - +0.3 737,401 - -0.5 737,401 - -0.4 737,484 - CSW01_18150 0.25 -1.0 737,773 + +1.9 737,882 - +0.4 737,896 + +1.1 737,959 + CSW01_18155 0.17 +0.5 737,959 + CSW01_18155 0.17 +0.0 737,989 - CSW01_18155 0.21 -0.5 738,136 + CSW01_18155 0.43 +0.8 738,141 + CSW01_18155 0.43 -2.5 738,224 - CSW01_18155 0.56 +0.2 738,312 - CSW01_18155 0.68 -3.8 738,407 + CSW01_18155 0.82 -0.4 738,455 + CSW01_18155 0.89 -0.1 738,472 + -0.2 738,480 - +1.4 738,491 + +1.7 738,515 + +0.2 738,551 - -2.5 738,551 - +1.6 738,553 + +0.1 738,553 + +1.1 738,553 + +0.7 738,553 + +1.4 738,739 - CSW01_18160 0.15 +0.9 738,787 + CSW01_18160 0.24 -1.5 738,922 + CSW01_18160 0.51 +0.7 738,930 - CSW01_18160 0.52 -2.1 738,939 + CSW01_18160 0.54 +0.5 739,060 - CSW01_18160 0.78 -0.3 739,078 + CSW01_18160 0.81 +0.2 739,078 + CSW01_18160 0.81 -1.2 739,086 - CSW01_18160 0.83 +1.3 739,086 - CSW01_18160 0.83 +0.4 739,086 - CSW01_18160 0.83 -0.2 739,152 + -0.3 739,195 + -0.5 739,239 + +0.0 739,261 + +0.7 739,396 - +0.6 739,402 + +1.4 739,402 + +0.2 739,402 + -2.8 739,410 - -0.6 739,412 + +0.9 739,420 - -0.1 739,514 + +0.3 739,514 + +1.3 739,522 - -0.4
Or see this region's nucleotide sequence