Experiment: ICP3_phage_0.41_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18020 and CSW01_18025 are separated by 36 nucleotides CSW01_18025 and CSW01_18030 are separated by 36 nucleotides CSW01_18030 and CSW01_18035 are separated by 363 nucleotides
CSW01_18020: CSW01_18020 - DEAD/DEAH box helicase, at 709,633 to 710,901
_18020
CSW01_18025: CSW01_18025 - ACP phosphodiesterase, at 710,938 to 711,519
_18025
CSW01_18030: CSW01_18030 - hypothetical protein, at 711,556 to 711,675
_18030
CSW01_18035: CSW01_18035 - tyrosine transporter TyrP, at 712,039 to 713,241
_18035
Position (kb) 710
711
712 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 710.181 kb on - strand, within CSW01_18020 at 710.254 kb on + strand, within CSW01_18020 at 710.324 kb on + strand, within CSW01_18020 at 710.379 kb on - strand, within CSW01_18020 at 710.390 kb on - strand, within CSW01_18020 at 710.428 kb on + strand, within CSW01_18020 at 710.430 kb on + strand, within CSW01_18020 at 710.567 kb on + strand, within CSW01_18020 at 710.582 kb on - strand, within CSW01_18020 at 710.605 kb on + strand, within CSW01_18020 at 710.613 kb on - strand, within CSW01_18020 at 710.682 kb on + strand, within CSW01_18020 at 710.843 kb on + strand at 710.892 kb on + strand at 710.958 kb on - strand at 711.016 kb on - strand, within CSW01_18025 at 711.018 kb on + strand, within CSW01_18025 at 711.019 kb on + strand, within CSW01_18025 at 711.026 kb on - strand, within CSW01_18025 at 711.041 kb on + strand, within CSW01_18025 at 711.041 kb on + strand, within CSW01_18025 at 711.069 kb on + strand, within CSW01_18025 at 711.074 kb on + strand, within CSW01_18025 at 711.079 kb on + strand, within CSW01_18025 at 711.082 kb on - strand, within CSW01_18025 at 711.100 kb on + strand, within CSW01_18025 at 711.124 kb on + strand, within CSW01_18025 at 711.199 kb on + strand, within CSW01_18025 at 711.207 kb on - strand, within CSW01_18025 at 711.207 kb on - strand, within CSW01_18025 at 711.260 kb on - strand, within CSW01_18025 at 711.285 kb on + strand, within CSW01_18025 at 711.372 kb on + strand, within CSW01_18025 at 711.385 kb on + strand, within CSW01_18025 at 711.587 kb on - strand, within CSW01_18030 at 711.637 kb on - strand, within CSW01_18030 at 711.639 kb on + strand, within CSW01_18030 at 711.647 kb on - strand, within CSW01_18030 at 711.683 kb on - strand at 711.683 kb on - strand at 711.710 kb on + strand at 711.737 kb on + strand at 711.761 kb on - strand at 711.767 kb on + strand at 711.817 kb on - strand at 712.284 kb on - strand, within CSW01_18035 at 712.471 kb on - strand, within CSW01_18035 at 712.500 kb on + strand, within CSW01_18035
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep2 remove 710,181 - CSW01_18020 0.43 -0.2 710,254 + CSW01_18020 0.49 -0.7 710,324 + CSW01_18020 0.54 -1.6 710,379 - CSW01_18020 0.59 +0.4 710,390 - CSW01_18020 0.60 +2.0 710,428 + CSW01_18020 0.63 -0.4 710,430 + CSW01_18020 0.63 -0.7 710,567 + CSW01_18020 0.74 +0.1 710,582 - CSW01_18020 0.75 -0.9 710,605 + CSW01_18020 0.77 -0.3 710,613 - CSW01_18020 0.77 +4.8 710,682 + CSW01_18020 0.83 -1.9 710,843 + +1.4 710,892 + +1.6 710,958 - -0.1 711,016 - CSW01_18025 0.13 -2.5 711,018 + CSW01_18025 0.14 +1.0 711,019 + CSW01_18025 0.14 +2.3 711,026 - CSW01_18025 0.15 -3.0 711,041 + CSW01_18025 0.18 -1.4 711,041 + CSW01_18025 0.18 -1.5 711,069 + CSW01_18025 0.23 +0.4 711,074 + CSW01_18025 0.23 -0.2 711,079 + CSW01_18025 0.24 +0.3 711,082 - CSW01_18025 0.25 -2.6 711,100 + CSW01_18025 0.28 -2.9 711,124 + CSW01_18025 0.32 +0.1 711,199 + CSW01_18025 0.45 -0.0 711,207 - CSW01_18025 0.46 -2.7 711,207 - CSW01_18025 0.46 +0.9 711,260 - CSW01_18025 0.55 -0.8 711,285 + CSW01_18025 0.60 -1.2 711,372 + CSW01_18025 0.75 +0.0 711,385 + CSW01_18025 0.77 +0.1 711,587 - CSW01_18030 0.26 +1.2 711,637 - CSW01_18030 0.68 -2.2 711,639 + CSW01_18030 0.69 -0.4 711,647 - CSW01_18030 0.76 -1.2 711,683 - +2.3 711,683 - -0.4 711,710 + -0.2 711,737 + +0.9 711,761 - +0.1 711,767 + +1.0 711,817 - -1.4 712,284 - CSW01_18035 0.20 -0.4 712,471 - CSW01_18035 0.36 -0.0 712,500 + CSW01_18035 0.38 -2.7
Or see this region's nucleotide sequence