Experiment: ICP3_phage_0.41_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17995 and CSW01_18000 are separated by 309 nucleotides CSW01_18000 and CSW01_18005 overlap by 16 nucleotides
CSW01_17995: CSW01_17995 - DUF3763 domain-containing protein, at 704,717 to 706,375
_17995
CSW01_18000: CSW01_18000 - NUDIX hydrolase, at 706,685 to 707,242
_18000
CSW01_18005: CSW01_18005 - low-specificity L-threonine aldolase, at 707,227 to 708,258
_18005
Position (kb) 706
707
708 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 705.685 kb on + strand, within CSW01_17995 at 705.693 kb on - strand, within CSW01_17995 at 705.737 kb on + strand, within CSW01_17995 at 705.845 kb on + strand, within CSW01_17995 at 705.853 kb on - strand, within CSW01_17995 at 705.877 kb on - strand, within CSW01_17995 at 705.877 kb on - strand, within CSW01_17995 at 705.975 kb on + strand, within CSW01_17995 at 705.975 kb on + strand, within CSW01_17995 at 705.983 kb on - strand, within CSW01_17995 at 706.280 kb on + strand at 706.302 kb on + strand at 706.346 kb on - strand at 706.348 kb on + strand at 706.348 kb on + strand at 706.356 kb on - strand at 706.356 kb on - strand at 706.356 kb on - strand at 706.356 kb on - strand at 706.404 kb on - strand at 706.546 kb on + strand at 706.681 kb on - strand at 706.684 kb on + strand at 706.765 kb on + strand, within CSW01_18000 at 706.810 kb on - strand, within CSW01_18000 at 706.937 kb on + strand, within CSW01_18000 at 706.940 kb on - strand, within CSW01_18000 at 706.952 kb on + strand, within CSW01_18000 at 706.967 kb on - strand, within CSW01_18000 at 707.220 kb on - strand at 707.314 kb on + strand at 707.360 kb on + strand, within CSW01_18005 at 707.406 kb on + strand, within CSW01_18005 at 707.406 kb on + strand, within CSW01_18005 at 707.414 kb on - strand, within CSW01_18005 at 707.500 kb on - strand, within CSW01_18005 at 707.519 kb on + strand, within CSW01_18005 at 707.778 kb on + strand, within CSW01_18005 at 707.873 kb on + strand, within CSW01_18005 at 707.991 kb on + strand, within CSW01_18005 at 707.991 kb on + strand, within CSW01_18005 at 707.991 kb on + strand, within CSW01_18005 at 707.999 kb on - strand, within CSW01_18005 at 707.999 kb on - strand, within CSW01_18005 at 708.076 kb on - strand, within CSW01_18005 at 708.097 kb on + strand, within CSW01_18005 at 708.168 kb on + strand at 708.168 kb on + strand at 708.176 kb on - strand at 708.201 kb on - strand at 708.201 kb on - strand at 708.209 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep2 remove 705,685 + CSW01_17995 0.58 -1.4 705,693 - CSW01_17995 0.59 +0.8 705,737 + CSW01_17995 0.61 +2.0 705,845 + CSW01_17995 0.68 -0.7 705,853 - CSW01_17995 0.68 -0.7 705,877 - CSW01_17995 0.70 +0.1 705,877 - CSW01_17995 0.70 -1.1 705,975 + CSW01_17995 0.76 +1.3 705,975 + CSW01_17995 0.76 +0.3 705,983 - CSW01_17995 0.76 +0.1 706,280 + -0.4 706,302 + -1.3 706,346 - -0.8 706,348 + +0.4 706,348 + +0.5 706,356 - -0.4 706,356 - +0.6 706,356 - -0.1 706,356 - +0.3 706,404 - -0.7 706,546 + +1.1 706,681 - +0.4 706,684 + +0.3 706,765 + CSW01_18000 0.14 -0.9 706,810 - CSW01_18000 0.22 -1.7 706,937 + CSW01_18000 0.45 -0.5 706,940 - CSW01_18000 0.46 -3.1 706,952 + CSW01_18000 0.48 -0.4 706,967 - CSW01_18000 0.51 +0.4 707,220 - +1.0 707,314 + -1.1 707,360 + CSW01_18005 0.13 -1.1 707,406 + CSW01_18005 0.17 +0.1 707,406 + CSW01_18005 0.17 -0.3 707,414 - CSW01_18005 0.18 +0.9 707,500 - CSW01_18005 0.26 -0.1 707,519 + CSW01_18005 0.28 +1.4 707,778 + CSW01_18005 0.53 +1.0 707,873 + CSW01_18005 0.63 +1.4 707,991 + CSW01_18005 0.74 -2.8 707,991 + CSW01_18005 0.74 +1.9 707,991 + CSW01_18005 0.74 +0.6 707,999 - CSW01_18005 0.75 -0.4 707,999 - CSW01_18005 0.75 -1.3 708,076 - CSW01_18005 0.82 -0.8 708,097 + CSW01_18005 0.84 -1.8 708,168 + +3.2 708,168 + -1.3 708,176 - -1.6 708,201 - -0.6 708,201 - +0.5 708,209 - +0.4
Or see this region's nucleotide sequence