Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17920

Experiment: ICP3_phage_0.41_MOI_rep2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_17915 and CSW01_17920 overlap by 4 nucleotidesCSW01_17920 and CSW01_17925 are separated by 141 nucleotides CSW01_17915: CSW01_17915 - anaerobic glycerol-3-phosphate dehydrogenase subunit B, at 691,074 to 692,384 _17915 CSW01_17920: CSW01_17920 - anaerobic glycerol-3-phosphate dehydrogenase subunit C, at 692,381 to 693,622 _17920 CSW01_17925: CSW01_17925 - 3-oxoacyl-ACP synthase III, at 693,764 to 694,852 _17925 Position (kb) 692 693 694Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 691.385 kb on - strand, within CSW01_17915at 691.407 kb on - strand, within CSW01_17915at 691.436 kb on + strand, within CSW01_17915at 691.457 kb on + strand, within CSW01_17915at 691.540 kb on + strand, within CSW01_17915at 691.570 kb on + strand, within CSW01_17915at 691.578 kb on - strand, within CSW01_17915at 691.621 kb on + strand, within CSW01_17915at 691.631 kb on + strand, within CSW01_17915at 691.631 kb on + strand, within CSW01_17915at 691.639 kb on - strand, within CSW01_17915at 691.639 kb on - strand, within CSW01_17915at 691.639 kb on - strand, within CSW01_17915at 691.724 kb on - strand, within CSW01_17915at 691.855 kb on - strand, within CSW01_17915at 691.965 kb on - strand, within CSW01_17915at 691.971 kb on + strand, within CSW01_17915at 691.977 kb on - strand, within CSW01_17915at 692.023 kb on - strand, within CSW01_17915at 692.028 kb on - strand, within CSW01_17915at 692.052 kb on + strand, within CSW01_17915at 692.052 kb on + strand, within CSW01_17915at 692.055 kb on + strand, within CSW01_17915at 692.070 kb on - strand, within CSW01_17915at 692.127 kb on + strand, within CSW01_17915at 692.184 kb on + strand, within CSW01_17915at 692.259 kb on - strandat 692.267 kb on + strandat 692.275 kb on - strandat 692.298 kb on + strandat 692.306 kb on - strandat 692.339 kb on - strandat 692.365 kb on + strandat 692.378 kb on + strandat 692.378 kb on + strandat 692.385 kb on + strandat 692.386 kb on - strandat 692.408 kb on - strandat 692.421 kb on + strandat 692.456 kb on + strandat 692.458 kb on + strandat 692.458 kb on + strandat 692.464 kb on - strandat 692.464 kb on - strandat 692.466 kb on - strandat 692.496 kb on + strandat 692.506 kb on + strand, within CSW01_17920at 692.511 kb on + strand, within CSW01_17920at 692.541 kb on - strand, within CSW01_17920at 692.589 kb on - strand, within CSW01_17920at 692.681 kb on - strand, within CSW01_17920at 692.752 kb on - strand, within CSW01_17920at 692.799 kb on - strand, within CSW01_17920at 692.815 kb on + strand, within CSW01_17920at 692.823 kb on - strand, within CSW01_17920at 692.823 kb on - strand, within CSW01_17920at 692.993 kb on - strand, within CSW01_17920at 693.091 kb on + strand, within CSW01_17920at 693.114 kb on + strand, within CSW01_17920at 693.135 kb on - strand, within CSW01_17920at 693.136 kb on - strand, within CSW01_17920at 693.137 kb on + strand, within CSW01_17920at 693.145 kb on - strand, within CSW01_17920at 693.198 kb on + strand, within CSW01_17920at 693.206 kb on - strand, within CSW01_17920at 693.279 kb on - strand, within CSW01_17920at 693.308 kb on - strand, within CSW01_17920at 693.345 kb on + strand, within CSW01_17920at 693.345 kb on + strand, within CSW01_17920at 693.355 kb on + strand, within CSW01_17920at 693.380 kb on - strand, within CSW01_17920at 693.380 kb on - strand, within CSW01_17920at 693.380 kb on - strand, within CSW01_17920at 693.396 kb on - strand, within CSW01_17920at 693.442 kb on + strand, within CSW01_17920at 693.528 kb on + strandat 693.636 kb on + strandat 693.694 kb on - strandat 693.706 kb on - strandat 693.812 kb on + strandat 693.820 kb on - strandat 693.820 kb on - strandat 693.904 kb on + strand, within CSW01_17925at 693.905 kb on + strand, within CSW01_17925at 693.905 kb on + strand, within CSW01_17925at 693.913 kb on - strand, within CSW01_17925at 693.913 kb on - strand, within CSW01_17925at 693.913 kb on - strand, within CSW01_17925at 693.913 kb on - strand, within CSW01_17925at 693.964 kb on + strand, within CSW01_17925at 693.980 kb on - strand, within CSW01_17925at 694.014 kb on - strand, within CSW01_17925at 694.037 kb on + strand, within CSW01_17925at 694.072 kb on + strand, within CSW01_17925at 694.081 kb on - strand, within CSW01_17925at 694.230 kb on + strand, within CSW01_17925at 694.238 kb on - strand, within CSW01_17925at 694.352 kb on - strand, within CSW01_17925at 694.357 kb on + strand, within CSW01_17925at 694.360 kb on - strand, within CSW01_17925at 694.374 kb on + strand, within CSW01_17925at 694.384 kb on + strand, within CSW01_17925at 694.390 kb on - strand, within CSW01_17925at 694.394 kb on + strand, within CSW01_17925at 694.407 kb on - strand, within CSW01_17925at 694.450 kb on - strand, within CSW01_17925at 694.519 kb on - strand, within CSW01_17925

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep2
remove
691,385 - CSW01_17915 0.24 -1.1
691,407 - CSW01_17915 0.25 +0.8
691,436 + CSW01_17915 0.28 +0.1
691,457 + CSW01_17915 0.29 -1.4
691,540 + CSW01_17915 0.36 +1.1
691,570 + CSW01_17915 0.38 +0.1
691,578 - CSW01_17915 0.38 +1.0
691,621 + CSW01_17915 0.42 -1.0
691,631 + CSW01_17915 0.42 +0.3
691,631 + CSW01_17915 0.42 +0.3
691,639 - CSW01_17915 0.43 +2.8
691,639 - CSW01_17915 0.43 -3.4
691,639 - CSW01_17915 0.43 -2.6
691,724 - CSW01_17915 0.50 +1.5
691,855 - CSW01_17915 0.60 +0.9
691,965 - CSW01_17915 0.68 +0.6
691,971 + CSW01_17915 0.68 -0.1
691,977 - CSW01_17915 0.69 -1.3
692,023 - CSW01_17915 0.72 +0.9
692,028 - CSW01_17915 0.73 -0.4
692,052 + CSW01_17915 0.75 -1.3
692,052 + CSW01_17915 0.75 -0.3
692,055 + CSW01_17915 0.75 -0.1
692,070 - CSW01_17915 0.76 +1.4
692,127 + CSW01_17915 0.80 +0.6
692,184 + CSW01_17915 0.85 -1.4
692,259 - +0.1
692,267 + -1.7
692,275 - -2.4
692,298 + +0.4
692,306 - -1.6
692,339 - -1.9
692,365 + -0.0
692,378 + -0.7
692,378 + +0.3
692,385 + -0.3
692,386 - +0.7
692,408 - +1.0
692,421 + +0.3
692,456 + -1.8
692,458 + -1.2
692,458 + +0.1
692,464 - -0.2
692,464 - +0.5
692,466 - -2.7
692,496 + -3.5
692,506 + CSW01_17920 0.10 +0.7
692,511 + CSW01_17920 0.10 +1.2
692,541 - CSW01_17920 0.13 -0.6
692,589 - CSW01_17920 0.17 -0.9
692,681 - CSW01_17920 0.24 -2.4
692,752 - CSW01_17920 0.30 +2.5
692,799 - CSW01_17920 0.34 +0.5
692,815 + CSW01_17920 0.35 +0.6
692,823 - CSW01_17920 0.36 +0.9
692,823 - CSW01_17920 0.36 -0.9
692,993 - CSW01_17920 0.49 +0.4
693,091 + CSW01_17920 0.57 +0.9
693,114 + CSW01_17920 0.59 +1.7
693,135 - CSW01_17920 0.61 +0.3
693,136 - CSW01_17920 0.61 +1.2
693,137 + CSW01_17920 0.61 +0.9
693,145 - CSW01_17920 0.62 +1.2
693,198 + CSW01_17920 0.66 -1.8
693,206 - CSW01_17920 0.66 +1.5
693,279 - CSW01_17920 0.72 -1.6
693,308 - CSW01_17920 0.75 +1.4
693,345 + CSW01_17920 0.78 -3.2
693,345 + CSW01_17920 0.78 -0.9
693,355 + CSW01_17920 0.78 +0.3
693,380 - CSW01_17920 0.80 +0.7
693,380 - CSW01_17920 0.80 +0.2
693,380 - CSW01_17920 0.80 -0.2
693,396 - CSW01_17920 0.82 -0.2
693,442 + CSW01_17920 0.85 +0.0
693,528 + +0.6
693,636 + -1.0
693,694 - +1.5
693,706 - +1.0
693,812 + -3.5
693,820 - +0.9
693,820 - +1.1
693,904 + CSW01_17925 0.13 +2.0
693,905 + CSW01_17925 0.13 +0.2
693,905 + CSW01_17925 0.13 +1.3
693,913 - CSW01_17925 0.14 -0.2
693,913 - CSW01_17925 0.14 -1.9
693,913 - CSW01_17925 0.14 +0.1
693,913 - CSW01_17925 0.14 +1.0
693,964 + CSW01_17925 0.18 -0.5
693,980 - CSW01_17925 0.20 -0.1
694,014 - CSW01_17925 0.23 -2.2
694,037 + CSW01_17925 0.25 +0.5
694,072 + CSW01_17925 0.28 -0.7
694,081 - CSW01_17925 0.29 +0.2
694,230 + CSW01_17925 0.43 -2.7
694,238 - CSW01_17925 0.44 +0.6
694,352 - CSW01_17925 0.54 -1.0
694,357 + CSW01_17925 0.54 -1.1
694,360 - CSW01_17925 0.55 -1.1
694,374 + CSW01_17925 0.56 +0.5
694,384 + CSW01_17925 0.57 +1.1
694,390 - CSW01_17925 0.57 -1.1
694,394 + CSW01_17925 0.58 -0.6
694,407 - CSW01_17925 0.59 -0.7
694,450 - CSW01_17925 0.63 -1.4
694,519 - CSW01_17925 0.69 +1.2

Or see this region's nucleotide sequence