Experiment: ICP3_phage_0.41_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17900 and CSW01_17905 are separated by 129 nucleotides CSW01_17905 and CSW01_17910 are separated by 654 nucleotides
CSW01_17900: CSW01_17900 - glycerol kinase, at 686,278 to 687,795
_17900
CSW01_17905: CSW01_17905 - aquaporin family protein, at 687,925 to 688,779
_17905
CSW01_17910: CSW01_17910 - anaerobic glycerol-3-phosphate dehydrogenase subunit A, at 689,434 to 691,077
_17910
Position (kb) 687
688
689 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 686.977 kb on - strand, within CSW01_17900 at 687.048 kb on - strand, within CSW01_17900 at 687.126 kb on - strand, within CSW01_17900 at 687.222 kb on + strand, within CSW01_17900 at 687.222 kb on + strand, within CSW01_17900 at 687.222 kb on + strand, within CSW01_17900 at 687.230 kb on - strand, within CSW01_17900 at 687.242 kb on + strand, within CSW01_17900 at 687.244 kb on - strand, within CSW01_17900 at 687.275 kb on - strand, within CSW01_17900 at 687.331 kb on - strand, within CSW01_17900 at 687.363 kb on - strand, within CSW01_17900 at 687.380 kb on + strand, within CSW01_17900 at 687.573 kb on + strand, within CSW01_17900 at 687.615 kb on + strand, within CSW01_17900 at 687.622 kb on + strand, within CSW01_17900 at 687.623 kb on - strand, within CSW01_17900 at 687.660 kb on - strand at 687.682 kb on - strand at 687.727 kb on + strand at 687.727 kb on + strand at 687.735 kb on - strand at 687.843 kb on + strand at 687.880 kb on - strand at 687.892 kb on - strand at 687.936 kb on + strand at 687.948 kb on + strand at 687.954 kb on - strand at 687.956 kb on - strand at 687.956 kb on - strand at 687.984 kb on - strand at 688.140 kb on + strand, within CSW01_17905 at 688.165 kb on - strand, within CSW01_17905 at 688.171 kb on - strand, within CSW01_17905 at 688.173 kb on - strand, within CSW01_17905 at 688.237 kb on + strand, within CSW01_17905 at 688.294 kb on + strand, within CSW01_17905 at 688.294 kb on + strand, within CSW01_17905 at 688.294 kb on + strand, within CSW01_17905 at 688.302 kb on - strand, within CSW01_17905 at 688.372 kb on - strand, within CSW01_17905 at 688.457 kb on + strand, within CSW01_17905 at 688.465 kb on - strand, within CSW01_17905 at 688.513 kb on - strand, within CSW01_17905 at 688.568 kb on + strand, within CSW01_17905 at 688.568 kb on + strand, within CSW01_17905 at 688.576 kb on - strand, within CSW01_17905 at 688.719 kb on - strand at 688.721 kb on + strand at 688.744 kb on - strand at 688.763 kb on - strand at 688.848 kb on - strand at 689.311 kb on + strand at 689.418 kb on + strand at 689.418 kb on + strand at 689.430 kb on + strand at 689.441 kb on - strand at 689.441 kb on - strand at 689.441 kb on - strand at 689.501 kb on - strand at 689.510 kb on + strand at 689.534 kb on + strand at 689.573 kb on - strand at 689.755 kb on + strand, within CSW01_17910
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep2 remove 686,977 - CSW01_17900 0.46 +1.0 687,048 - CSW01_17900 0.51 -2.6 687,126 - CSW01_17900 0.56 +0.2 687,222 + CSW01_17900 0.62 -0.3 687,222 + CSW01_17900 0.62 +0.7 687,222 + CSW01_17900 0.62 -0.7 687,230 - CSW01_17900 0.63 +0.4 687,242 + CSW01_17900 0.64 +0.3 687,244 - CSW01_17900 0.64 +1.6 687,275 - CSW01_17900 0.66 -2.2 687,331 - CSW01_17900 0.69 +0.9 687,363 - CSW01_17900 0.71 -0.5 687,380 + CSW01_17900 0.73 -1.1 687,573 + CSW01_17900 0.85 +0.0 687,615 + CSW01_17900 0.88 -0.7 687,622 + CSW01_17900 0.89 +0.2 687,623 - CSW01_17900 0.89 +0.6 687,660 - -3.2 687,682 - +0.1 687,727 + -4.2 687,727 + +0.3 687,735 - +1.4 687,843 + -1.6 687,880 - +0.1 687,892 - -1.6 687,936 + -1.2 687,948 + -2.7 687,954 - -0.9 687,956 - -1.9 687,956 - -1.6 687,984 - -1.1 688,140 + CSW01_17905 0.25 +1.0 688,165 - CSW01_17905 0.28 -2.7 688,171 - CSW01_17905 0.29 +1.5 688,173 - CSW01_17905 0.29 -2.2 688,237 + CSW01_17905 0.36 -0.1 688,294 + CSW01_17905 0.43 -0.1 688,294 + CSW01_17905 0.43 -1.8 688,294 + CSW01_17905 0.43 -2.7 688,302 - CSW01_17905 0.44 -0.7 688,372 - CSW01_17905 0.52 -1.1 688,457 + CSW01_17905 0.62 +1.7 688,465 - CSW01_17905 0.63 -1.6 688,513 - CSW01_17905 0.69 +0.9 688,568 + CSW01_17905 0.75 -1.9 688,568 + CSW01_17905 0.75 -0.8 688,576 - CSW01_17905 0.76 +0.4 688,719 - -0.2 688,721 + -2.0 688,744 - -1.3 688,763 - -0.7 688,848 - +1.0 689,311 + +1.5 689,418 + +1.3 689,418 + -0.7 689,430 + +0.5 689,441 - -1.2 689,441 - +1.8 689,441 - +0.8 689,501 - +0.5 689,510 + +0.4 689,534 + +0.5 689,573 - +1.1 689,755 + CSW01_17910 0.20 -1.3
Or see this region's nucleotide sequence