Experiment: ICP3_phage_0.41_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17770 and CSW01_17775 overlap by 4 nucleotides CSW01_17775 and CSW01_17780 are separated by 277 nucleotides CSW01_17780 and CSW01_17785 are separated by 56 nucleotides CSW01_17785 and CSW01_17790 are separated by 29 nucleotides
CSW01_17770: CSW01_17770 - two-component sensor histidine kinase, at 662,376 to 663,323
_17770
CSW01_17775: CSW01_17775 - guanylate cyclase, at 663,320 to 663,895
_17775
CSW01_17780: CSW01_17780 - hypothetical protein, at 664,173 to 664,334
_17780
CSW01_17785: CSW01_17785 - hypothetical protein, at 664,391 to 664,681
_17785
CSW01_17790: CSW01_17790 - 3-hydroxy-3-methylglutaryl-CoA reductase, at 664,711 to 666,021
_17790
Position (kb) 664
665 Strain fitness (log2 ratio) -2
-1
0
1 at 663.173 kb on + strand, within CSW01_17770 at 663.181 kb on + strand, within CSW01_17770 at 663.217 kb on - strand, within CSW01_17770 at 663.363 kb on + strand at 663.363 kb on - strand at 663.363 kb on - strand at 663.393 kb on - strand, within CSW01_17775 at 663.428 kb on + strand, within CSW01_17775 at 663.561 kb on + strand, within CSW01_17775 at 663.592 kb on - strand, within CSW01_17775 at 663.624 kb on + strand, within CSW01_17775 at 663.665 kb on + strand, within CSW01_17775 at 663.750 kb on + strand, within CSW01_17775 at 663.753 kb on - strand, within CSW01_17775 at 663.758 kb on - strand, within CSW01_17775 at 663.768 kb on - strand, within CSW01_17775 at 663.978 kb on - strand at 663.983 kb on - strand at 664.060 kb on + strand at 664.100 kb on + strand at 664.108 kb on - strand at 664.123 kb on + strand at 664.292 kb on - strand, within CSW01_17780 at 664.294 kb on + strand, within CSW01_17780 at 664.389 kb on - strand at 664.389 kb on - strand at 664.435 kb on - strand, within CSW01_17785 at 664.435 kb on - strand, within CSW01_17785 at 664.525 kb on + strand, within CSW01_17785 at 664.567 kb on + strand, within CSW01_17785 at 664.569 kb on + strand, within CSW01_17785 at 664.748 kb on + strand at 664.874 kb on + strand, within CSW01_17790 at 664.886 kb on + strand, within CSW01_17790 at 664.886 kb on + strand, within CSW01_17790 at 664.886 kb on + strand, within CSW01_17790 at 664.894 kb on - strand, within CSW01_17790 at 664.894 kb on - strand, within CSW01_17790 at 664.956 kb on + strand, within CSW01_17790 at 665.024 kb on - strand, within CSW01_17790 at 665.129 kb on + strand, within CSW01_17790 at 665.154 kb on + strand, within CSW01_17790 at 665.299 kb on - strand, within CSW01_17790 at 665.301 kb on + strand, within CSW01_17790 at 665.309 kb on - strand, within CSW01_17790 at 665.309 kb on - strand, within CSW01_17790 at 665.309 kb on - strand, within CSW01_17790
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep2 remove 663,173 + CSW01_17770 0.84 -1.2 663,181 + CSW01_17770 0.85 +0.0 663,217 - CSW01_17770 0.89 +1.1 663,363 + -1.2 663,363 - -1.1 663,363 - +0.2 663,393 - CSW01_17775 0.13 +0.1 663,428 + CSW01_17775 0.19 +1.0 663,561 + CSW01_17775 0.42 +0.4 663,592 - CSW01_17775 0.47 +1.5 663,624 + CSW01_17775 0.53 +0.6 663,665 + CSW01_17775 0.60 -1.7 663,750 + CSW01_17775 0.75 -2.6 663,753 - CSW01_17775 0.75 -1.9 663,758 - CSW01_17775 0.76 -1.3 663,768 - CSW01_17775 0.78 -1.2 663,978 - +0.6 663,983 - -1.4 664,060 + -0.8 664,100 + -0.9 664,108 - +0.0 664,123 + -1.5 664,292 - CSW01_17780 0.73 -0.3 664,294 + CSW01_17780 0.75 -0.7 664,389 - -1.1 664,389 - -2.0 664,435 - CSW01_17785 0.15 -1.7 664,435 - CSW01_17785 0.15 +1.0 664,525 + CSW01_17785 0.46 +1.0 664,567 + CSW01_17785 0.60 -1.3 664,569 + CSW01_17785 0.61 +0.1 664,748 + -1.5 664,874 + CSW01_17790 0.12 -2.5 664,886 + CSW01_17790 0.13 -0.0 664,886 + CSW01_17790 0.13 +1.0 664,886 + CSW01_17790 0.13 -0.3 664,894 - CSW01_17790 0.14 +1.1 664,894 - CSW01_17790 0.14 +1.5 664,956 + CSW01_17790 0.19 +0.1 665,024 - CSW01_17790 0.24 -0.6 665,129 + CSW01_17790 0.32 -2.3 665,154 + CSW01_17790 0.34 +0.5 665,299 - CSW01_17790 0.45 +0.4 665,301 + CSW01_17790 0.45 -1.4 665,309 - CSW01_17790 0.46 +0.4 665,309 - CSW01_17790 0.46 +0.4 665,309 - CSW01_17790 0.46 -0.0
Or see this region's nucleotide sequence